| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1049 |
|---|
| Symbol | |
|---|
| ID | 5057496 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1187404 |
|---|
| End bp | 1188426 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640473318 |
|---|
| Product | regulatory protein, LysR |
|---|
| Protein accession | YP_001157900 |
|---|
| Protein GI | 145593603 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.97331 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCGATC ACGCGGACTT CAGCCTGGCT CAACTCCGGT ACTTCGTAAC TTCCGCCGAG
ATGGGAAACA TATCCGGCGC GGCACAGCAA TTACATGCTT CGCAGTCGGC CGTCTCGATG
GCGATCCAGC GCCTGGAGAA ACAACTGGAC ACCAAGCTGT TCTTCCGGCA CCGCACCAAA
GGAGTCAGCC TGACTCCCAG CGGCCGCGTC CTGCTCGACC CCGCGAAGTC GTTGCTGGCC
CAGGCGCAGG AGATGCTCGC CCACAGCCGC GAGTGGCAGG GCGAGACCTG CGGAATGCTC
AATGTGGCCG TTCTCCGCTC AGTCGCGCCC GATCTGGTGC CGGCTGTGAT GAGCCGAGTA
AAGAAGATGC GCCCTGGGCT GGCGGTCACC GTCCACGAGG GAACCATGGA CGATGTTCTC
GAACTGCTGC GCACGGGCAC GTGTGAACTC GCCGTAGTCC CGGAGCTGCC AGGTCAGGCT
CTGTCGTTCG CCCGGCTGGC GAAGGTGCTC ATGGCAGCGG TCGTTGCATG GTCCGATCCG
CTGGCGCCCG TGGGGCGCGC AACGCTTCGA CAGTTGGCCA CCCGGCGTCT CCTCGTGGCC
GACCTGGACG TTGATCGCCA AGTCGGCCTG GACACCCGGA CACGGCTGTT CGCCGACGCC
GGCACCCCCA CGCCAGAGGT GGTGCTGACA TCGAGCATCG CCACGATGCT TGGCCTCGTC
GGGGTCGGCG AGGGCTTCGC CCTGCTATAC CGGACCGCAG CCAGCCAGTG CTACCGACAG
GAACTCGCCT GGATCGACAT CGTCTCCGAA CGCCCGTGCG CATCCTGGCT TGGTGTGGCG
ACCATACCCG GCCTGGCTCT CAGCAGCCGT GCGGAGCTAT TCGTTTCCCT GCTCGATGAC
GCTGTCCGGA GCGTCTACTG CACGACGGCG GACGACGGGG TGAGTTCCCC TGGCAGCACT
GATATCTTCG ATCATGGAGC CTCTTTTGCT ACGGACCCCG CCGCACCCGC CTGGTCGACC
TAG
|
|---|
| Protein sequence | MADHADFSLA QLRYFVTSAE MGNISGAAQQ LHASQSAVSM AIQRLEKQLD TKLFFRHRTK
GVSLTPSGRV LLDPAKSLLA QAQEMLAHSR EWQGETCGML NVAVLRSVAP DLVPAVMSRV
KKMRPGLAVT VHEGTMDDVL ELLRTGTCEL AVVPELPGQA LSFARLAKVL MAAVVAWSDP
LAPVGRATLR QLATRRLLVA DLDVDRQVGL DTRTRLFADA GTPTPEVVLT SSIATMLGLV
GVGEGFALLY RTAASQCYRQ ELAWIDIVSE RPCASWLGVA TIPGLALSSR AELFVSLLDD
AVRSVYCTTA DDGVSSPGST DIFDHGASFA TDPAAPAWST
|
|---|
| |