Gene Strop_1007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_1007 
Symbol 
ID5057453 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp1129355 
End bp1131031 
Gene Length1677 bp 
Protein Length558 aa 
Translation table11 
GC content71% 
IMG OID640473277 
Producthypothetical protein 
Protein accessionYP_001157860 
Protein GI145593563 
COG category[L] Replication, recombination and repair 
COG ID[COG1337] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.517138 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCCAGT CCATCGGAAC CCGAATCGAG GTTCTCGGCA CCCTCACCTG CCTCGGCCCC 
GTCCACATTG GCGGCTGGGA CACCACCACC GAGGCGAGCC TGACCATCGC CCGCGACGGT
AAGGGGCAGC CGTTCCTGCC CGGCACCTCA ATCGCTGGGG CCCTGCGCGC CTACCTCGCT
GGCCTCGACC TTCCCCGTGG CGGGGATCCG GCGGCCGTGA CCGCCGCGCT GTTCGGAAGC
ATCACCCCGA ACAGCCAGGA CGGGTCGCCG TCGTGGATCC GCCTGGACGA CGCGCACCTG
GTTGCTGACG AGGTCGCGCC GACAGTGCGC GACGGCGTCG GTATCGACCG GGTTTCGGCC
ACCGCCGCCG CGAACTTCCT CTACACCCGT CAGGTACTGC CGGCCGGTAC CCGGTTCGCG
TTCCGCCTGG TCGCCGACAC CCCGACCGCC ACGGCTCCGG ACTATCCGGG TGGATGGTCG
ACGCTGGTCC GTGACGCCGT CGATGCCCTG GTGACAGGGC TGGCTCAGGC CCGGGTTCCG
ATCGGCGCCG GCCGGGGTCG GGGCTTCGGC CGGATGGGGC TGGGCGAGGT CACCATCCGC
AGCGCCGACC TTTCCGACCC GGCCGGCCTG ATTGCCTGGC TGACCGGCAC GGCCCCAGCC
GTGTCGCCGC CGCTGACCGA GGACAGCTCG GTCCGGGGCG ACCAGCCGCG GGATGGCCGG
CTGCGGATCA GCATCGCCTG GCGTCCGACC GGTCCGCTGC TGGTACGCGA CTCGCTCCCC
GGCACCGTGG TCGACACGCT GCCGCTGACG GACACGGCCG CCGACGGGAC GGTCCGGCTA
CTGCTGCCCG GCTCGTCGAT CCGGGGCGTG CTACGCGCAC ACGCCGAACG GATCGTCCGT
ACGCTGCGGC GGCAGGACGC CCCGGCGGAC TTCAACGATG CCCTGCGCCA GCCACCACCC
GGCGTTGACG TGCTGTTCGG GTCCGCACCC GCTGGCGACC GGGATGGTCG AGGGCACCCT
GCCGGGCACC GCGGCGACGG ACGGGGGCGT CGCGGCACCC TGGCCGTCGC CGACTGCCAC
AGCATCGGGC AGGTTGACGC CCGACAGTGG AACGACATCA TCAGCATCAG CCCCGATCCC
ACGAATCCGG CCAGCCGGGG GGAGCGCGCG GAGCGGAAGG AGCGCAACAG CCAACGGGAG
CAGGCCCGAT CCGGGCTGCA CCAGGAGCTG GCCAACATCC GGCAGCGTCT CCCGCTCTCG
GTGAGCGACC ACGTCGCCAT CGACCGATGG ACCGGCGGCG CCAGCGACCA CCGGCTGTTC
AGCGTCCTGG AACCGAGCCA CAGGACGGAA TGGGAACCGA TCTCAATCGA TATTGATGTT
ACCCAGCTGG ACCGGTACGG CGCTGCTGGC ATCGCGGGAT CGACGGCGCT GGCGTTACCG
CTGCTGCTGC TCGTCCTGCG GGACTTACGC GACGGATGGC TCGCCCTCGG CTTCGGTGGA
AGCCGTGGCC GGGGCCAGAT CGAGGTTACC GGCGTGACGT TCGACGGCGC CGGGCTGAGC
ACACCGTGGC AGGCACTGGC CGGACAGACC CTCGACACCG TTCTCACCGC CCCACCCCCA
CAGGTCACCG CGGCGATGAC TGGCTGGGCG GACACATTCG AGGAGGCAGG AGCGTGA
 
Protein sequence
MGQSIGTRIE VLGTLTCLGP VHIGGWDTTT EASLTIARDG KGQPFLPGTS IAGALRAYLA 
GLDLPRGGDP AAVTAALFGS ITPNSQDGSP SWIRLDDAHL VADEVAPTVR DGVGIDRVSA
TAAANFLYTR QVLPAGTRFA FRLVADTPTA TAPDYPGGWS TLVRDAVDAL VTGLAQARVP
IGAGRGRGFG RMGLGEVTIR SADLSDPAGL IAWLTGTAPA VSPPLTEDSS VRGDQPRDGR
LRISIAWRPT GPLLVRDSLP GTVVDTLPLT DTAADGTVRL LLPGSSIRGV LRAHAERIVR
TLRRQDAPAD FNDALRQPPP GVDVLFGSAP AGDRDGRGHP AGHRGDGRGR RGTLAVADCH
SIGQVDARQW NDIISISPDP TNPASRGERA ERKERNSQRE QARSGLHQEL ANIRQRLPLS
VSDHVAIDRW TGGASDHRLF SVLEPSHRTE WEPISIDIDV TQLDRYGAAG IAGSTALALP
LLLLVLRDLR DGWLALGFGG SRGRGQIEVT GVTFDGAGLS TPWQALAGQT LDTVLTAPPP
QVTAAMTGWA DTFEEAGA