Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_0854 |
Symbol | |
ID | 5057297 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | + |
Start bp | 957652 |
End bp | 958152 |
Gene Length | 501 bp |
Protein Length | 166 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 640473123 |
Product | sigma-70, region 4 type 2 |
Protein accession | YP_001157709 |
Protein GI | 145593412 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02983] RNA polymerase sigma-70 factor, sigma-E family |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.699676 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCGGATG TCGAGGGGTT CGACGAGTTC TACCGGGGGA GCCGGCAGCG GCTGCTCGGC TTTGTGTGTG TGCTCACCGG TGATCTCAGC GAGGCCCAGG ATGCGGTGCA GGAGGCGTAC ATCCGGGCCT GGCAGCGCTG GTCAACGGTG AGCGGGTACG ACGACCCGGA GGCGTGGGTG CGGGTGGTGG CGAGCCGGAT CGCGGTCAGC CGGTGGCGTA GCCTGCGTAG CCGGGCGCGG GCGTACCTGC GGCACGGTGC CGCCGAAAGC GTCCCCGCGC CAAGCACCGA CACGGTGGCG GTGGTCGCCG CGCTGCGCCG GCTGCCGGAG GAGCAGCGCA TCGCGATCGC GCTCTACTAC CTGGTGGGGA TGCCCGTCGT CGAGGTCGCC CGGGAGACCA ACGCCCCGGT CGGCACCGTC AAGGCCCGGC TGGCTCGCGG CCGGGCCGCT CTCGCCGGGC TACTTGCCGT CGCCGACCTG GAGGAGGCCG TCGATGCATG A
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Protein sequence | MPDVEGFDEF YRGSRQRLLG FVCVLTGDLS EAQDAVQEAY IRAWQRWSTV SGYDDPEAWV RVVASRIAVS RWRSLRSRAR AYLRHGAAES VPAPSTDTVA VVAALRRLPE EQRIAIALYY LVGMPVVEVA RETNAPVGTV KARLARGRAA LAGLLAVADL EEAVDA
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