| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4359 |
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| Symbol | |
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| ID | 5609717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5336154 |
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| End bp | 5337065 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935329 |
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| Product | general secretion pathway protein C |
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| Protein accession | YP_001476089 |
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| Protein GI | 157377489 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3031] Type II secretory pathway, component PulC |
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| TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0126021 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATTTAT TAGATAAAGT TATTAATAAG GCTGCGGGAA TACCGCATAA GCCTTTGAGT
TTGGCGGCTT TTTGGGTCGG TTTGTTAGTG ATCCTTTACC TCTTAGCTCA GATCACCTGG
AAGTTAGTTC CAGCCTCTGA TTCATCACCA AATTGGCTGC CTACCCCCGT AACCAGCAGT
TCGGGTAGTC GTGTCAGTAT TTCCGATTTG AAAGAGCTAT CTCTGTTCGG CAAGGCCGAT
TCAGGCTCAA ACCAGCCTAA AATTGCACCA GTTGAAGAAA AGATCACTGA TGCACCTAAG
ACCTCACTTT CGATTCAGTT GACCGGCGTT GTGGCCTCCA CATCACAACA GCATGGTTTA
GCAGTTATTG CCTCAAGTGG CAGTCAGAAC ACCTATAGTT TAGGTGATAA AATTAAAGGC
ACTTCGGCCT CGCTAAAAGA GGTCTATGCG GATCGTATTA TTATCACTAA CAGTGGTCGT
TATGAGACCT TGATGTTAGA TGGTCTAAAA TATGAGACTG GGGGTAAGGC GAACCAGCAG
TTACAGCGCG CCAAGTCGTC GGTTGGTAAG GTCGACAAGA GAAGAGACCG CCAGGTTGCC
AAAGAGCTGG TGAGCTCCAG AGACGAACTG TTGGCCGATC CGAGTAAATT AACCGACTAT
CTGGCCATTT CACCGGTAAA AAGTGGCGGA GAGCTTCAGG GTTACCGTTT AAATCCGGGT
AAAGACAGAG AGCTATTTAA GAGGGCCGGT TTTAAGGCTA ACGATTTAGC AAAATCAATT
AACGGCTACG ATTTGACTCA GATGAGTCAG GCATTAGAAG TCATGGCACA ACTACCTGAA
TTAACCGAGA TCTCATTGAT GATCGAACGG GAAGGGCAGC TGGTTGAGAT CCTGTTCAGT
CTGCCGCAAT AA
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| Protein sequence | MDLLDKVINK AAGIPHKPLS LAAFWVGLLV ILYLLAQITW KLVPASDSSP NWLPTPVTSS
SGSRVSISDL KELSLFGKAD SGSNQPKIAP VEEKITDAPK TSLSIQLTGV VASTSQQHGL
AVIASSGSQN TYSLGDKIKG TSASLKEVYA DRIIITNSGR YETLMLDGLK YETGGKANQQ
LQRAKSSVGK VDKRRDRQVA KELVSSRDEL LADPSKLTDY LAISPVKSGG ELQGYRLNPG
KDRELFKRAG FKANDLAKSI NGYDLTQMSQ ALEVMAQLPE LTEISLMIER EGQLVEILFS
LPQ
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