Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4289 |
Symbol | |
ID | 5613508 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5268610 |
End bp | 5269356 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640935252 |
Product | heme exporter protein CcmC |
Protein accession | YP_001476021 |
Protein GI | 157377421 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0755] ABC-type transport system involved in cytochrome c biogenesis, permease component |
TIGRFAM ID | [TIGR01191] heme exporter protein CcmC |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000000743229 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTGGAAAT GGCTACATAG TTACGCGGAT CCCGAACGCG CCTATAATTT ATCCGGAAAA CTCCTCCCTT GGTTCGCCAT GCTGGCAACT GGACTGATAG GTATTGGTTC TGTATGGGGG CTCGTATTTG CCCCAACCGA CTATCAGCAA GGTGATAGTT ATAGAATCAT CTTTATACAT GTACCGGCGG CTTCTATGTC TATGGCGGCA TACATGGCGA TGGCCAGCTC TGCTTTTATC GGACTTGTCT GGCAGATTAA ATCCGCTGAC TGGGCCGCTG CCGCGATTGC CCCCATCGGA GCTGTAATTA CCTTTATTGC ACTGATTACA GGTGCTACCT GGGGTAAACC TATGTGGGGC ACTTGGTGGG TCTGGGATGC ACGTTTAACC GCTGAACTGG TACTGCTTTT CCTATATTTA GGGGTTATAT CTCTTTATGC TTCGTTTGAA GATAAAGTAT TAGCAGCCAG AGCCGCTGGT ATCTTAGCCA TTGTCGGCGT AATTAATATT CCGATTATTA AATACTCTGT CGAGTGGTGG AGCTCGCTGC ATCAACCATC AACAATCAAG ATCACTGAGA AATCGAGTAT GTCTTCAGAT ATGCTCTATC CATTGCTGAT AAATATCGTT GGCTTTGGAA TGATGATAGG TGCAATTACA TTGATACGAT TCAGAGCCGA AATTTTAGCA AGAAATGGAA TGCGCCCTTG GGTACGGGAA CTAGCTAAAG CCGAAGGAGT CAAATAA
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Protein sequence | MWKWLHSYAD PERAYNLSGK LLPWFAMLAT GLIGIGSVWG LVFAPTDYQQ GDSYRIIFIH VPAASMSMAA YMAMASSAFI GLVWQIKSAD WAAAAIAPIG AVITFIALIT GATWGKPMWG TWWVWDARLT AELVLLFLYL GVISLYASFE DKVLAARAAG ILAIVGVINI PIIKYSVEWW SSLHQPSTIK ITEKSSMSSD MLYPLLINIV GFGMMIGAIT LIRFRAEILA RNGMRPWVRE LAKAEGVK
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