| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4287 |
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| Symbol | |
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| ID | 5613352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5267262 |
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| End bp | 5267912 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640935250 |
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| Product | cytochrome c biogenesis protein CcmA |
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| Protein accession | YP_001476019 |
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| Protein GI | 157377419 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4133] ABC-type transport system involved in cytochrome c biogenesis, ATPase component |
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| TIGRFAM ID | [TIGR01189] heme ABC exporter, ATP-binding protein CcmA |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000142733 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | GTGGCAGAAC AACAAATAGC AAAGACCCTG CTTTCAGCCA ATCAATTGAC CTGTATTCGT
GAAGAACGAA TTCTGTTTGA TGAACTTAGT TTTGAAATCA CAGCGGGCGA AATCGTTCAG
ATAGAGGGGC CGAATGGCTC TGGAAAAACC AGTTTACTGC GCATCTTAGC CGGTTTATCT
CGCCCATATG CCGGCGATGT TTATTATCAA GGCGAAGATA TAACCCGTAA CAGAGATGAG
TACAACGACG ATCTTCTCTA CCTCGGGCAC CTGGCTGGCG TAAAAACGGA GCTAACTGCT
GAAGAGAATC TTAACTTCAA TTTAAGGATT AGCGGGTATG ATCAGTTCGA TACTCGCGGC
ATACTTGGCA AAGTTAATTT AGCCGGTTTT GAAGAAGCAC TGGCGGGTCA TCTTTCAGCA
GGGCAGCATA GACGTACAGC ACTTGCACGA CTATGGCATA CTGACTGTAA GATTTGGCTG
TTAGACGAAC CTTTTACTGC GATTGATAAG AAAGGTGTTG AAGAGTTAGA GCACATCTTT
TTAGCCCATG CTAAACGAGG CGGTTGCGTC ATCATGACCA CCCACCAGGA TATGGGAATT
ATCGGTGACG ATATACTTCG CAAGATTAGT CTTGAGTATC GCTTTGTATA A
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| Protein sequence | MAEQQIAKTL LSANQLTCIR EERILFDELS FEITAGEIVQ IEGPNGSGKT SLLRILAGLS
RPYAGDVYYQ GEDITRNRDE YNDDLLYLGH LAGVKTELTA EENLNFNLRI SGYDQFDTRG
ILGKVNLAGF EEALAGHLSA GQHRRTALAR LWHTDCKIWL LDEPFTAIDK KGVEELEHIF
LAHAKRGGCV IMTTHQDMGI IGDDILRKIS LEYRFV
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