| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4251 |
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| Symbol | |
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| ID | 5610117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5222608 |
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| End bp | 5224488 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640935211 |
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| Product | LppC family lipoprotein |
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| Protein accession | YP_001475983 |
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| Protein GI | 157377383 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3107] Putative lipoprotein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.945552 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000616017 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTTGAAAA AAAGTGTGTT GAAAAGACTG AATACAACTA AATTAATTTC TATTGCAGTT
TTGAGTGCTG TCTTATTCGG TTGCGGAACA ACTCCCGCAC CGATAAAGCC CGCAGTAACA
CAGGTATCAT TGGTGAGCGC ATCTCTGCAA CCTGCTGAAT ACTTAGCTTT AGCTGCAAAA
TCAAATAACC AGGAAGTCCA GAATCGATAT GCTTTACTCG CCGCCCACGC CTTCATTAAT
GATGGCGATG CAGGTTCTGC AAATAAGGCG CTAAAGTCGA TCGAAAAAAG TTTAGTACAG
AAGCCTGAAC TCCTTGCCGA GCATAAATAC TTAACAGCTC GGGTACTCGA GCTGACTTCA
ACCTATGATC ATGCCCTCGC TGAGCTCGAT TATCCTAGCA GGTGGAAACT TGCCGACTGG
CAGATGGTGG CTTTTTATCA ATTCAAAGCC CGGTTATACC AACACATTAA ACAGCCGATT
GAGCAGGTAA GACAGCTCAG TCTATTAAGT TCTTATCTTC CGGCTTCTCA AGCCAGTGAA
GTGAACGATA GCATTTGGCG AATTTTACAG CCGATGCATG AACAGACCTT ACTCACGTTT
AGCCAAGATA GCTCCAGTCC GGTATTTGCT GGTTGGTTAC AGCTGGCCTA TATTGCAAAG
CACTATGCCA TCGACCCCAA TCAGCTGGTT CAACACTTAG GTGATTGGCA GCAGGTGAAC
CCCACTCATC CAGCGGCAAT CAAACTGCCG ACGGATCTGG AAAAAGCACT TAATGTTAAG
CCTTATAATC CTAAAAACAT CGCAGTACTT CTCCCCTTGA GCGGTACCAG AGCAACGCTC
GCCAGCACAG TAAAACAGGG GATAATGTCA CGTTATCTGG TTAACCCTGA TGATAGTGTA
TCCATCAACT TTTTCGATAC GGCTAAGGGG GCTCAAGCCG CTTATCAGGC AGCCATAAAC
TCTGGTGCTG AGTTTGTTAT CGGCCCACTA TTGCAATCTG AAGTGGAGCA GCTGCAGCAA
CCAGTTTCAA CTTCGGAGCC AAAATCGGCC CAGAGCCCAC AGAGTGACGC GTCAGTACAA
AGAGTGCCAC AGTTATACCT GAACCATATT GAAAACTTCA TCCCTGACGA CAATCAATTC
TATTTCGCAC TCTCTCCCGC TAATGAAGCC CGTGATGCGG CTAAGAAATT GTTTGATGAT
GGCATCACCA TGCCACTACT CCTGGCGAGT AATAATACCG TAGGTCATAG AATGGCCGAT
AGCTTCAACC AGGTGTGGAC CGAGCTGACT CAACAACCCG CTGAAGTTCA CTTCTATGAT
GCCGGCGATC AGATGAAAGT CACGGTACAG AAGTCTTTAG GCGTCATCGA TAGCAAGGAG
CGTATTGCTC GAATCAAGGC GCTGCTTGGC AATGATATTG AAGCCGACTT CCGTTCGAGG
CGTGATATTG ATGCTATCTA TATGATCTCG GGTAACCGTG ATCTTCCGCT ATTAAAACCT
TTCATCGACG TAAACTTTAG TGTTTTTGCC GATCCGGTTC CCCTATATAC CAGTAGCAGG
AGTCGTGTTG AGGGGAGTTC GCGTGAAACG GCTCAAGAGC TCAATAACCT CAATATCAGC
GATATTCCCT GGTTACTACA AAGCAGCAAA GAGACCCAGT TAGTCGAAGA TCTTTGGCCA
TCTTGGAGCT ATAGTCAGAA ACGTCTCTAT ATCATGGGCT ATGATGCCCT CGAACTTGTA
GGTAAACTTG CTCAAATGCG AGCCCTACCT GGCTACCAGT TTTCCGGACG TAGCGGTATG
TTATCCGTCT CACCCGATGG CACCGTAAAT AGAGAACTGA GCTGGGGTCG TTATCAGAGG
GGTAATTTAC GTCCTCAATG A
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| Protein sequence | MLKKSVLKRL NTTKLISIAV LSAVLFGCGT TPAPIKPAVT QVSLVSASLQ PAEYLALAAK
SNNQEVQNRY ALLAAHAFIN DGDAGSANKA LKSIEKSLVQ KPELLAEHKY LTARVLELTS
TYDHALAELD YPSRWKLADW QMVAFYQFKA RLYQHIKQPI EQVRQLSLLS SYLPASQASE
VNDSIWRILQ PMHEQTLLTF SQDSSSPVFA GWLQLAYIAK HYAIDPNQLV QHLGDWQQVN
PTHPAAIKLP TDLEKALNVK PYNPKNIAVL LPLSGTRATL ASTVKQGIMS RYLVNPDDSV
SINFFDTAKG AQAAYQAAIN SGAEFVIGPL LQSEVEQLQQ PVSTSEPKSA QSPQSDASVQ
RVPQLYLNHI ENFIPDDNQF YFALSPANEA RDAAKKLFDD GITMPLLLAS NNTVGHRMAD
SFNQVWTELT QQPAEVHFYD AGDQMKVTVQ KSLGVIDSKE RIARIKALLG NDIEADFRSR
RDIDAIYMIS GNRDLPLLKP FIDVNFSVFA DPVPLYTSSR SRVEGSSRET AQELNNLNIS
DIPWLLQSSK ETQLVEDLWP SWSYSQKRLY IMGYDALELV GKLAQMRALP GYQFSGRSGM
LSVSPDGTVN RELSWGRYQR GNLRPQ
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