| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4210 |
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| Symbol | |
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| ID | 5611916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5172261 |
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| End bp | 5173268 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640935169 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001475942 |
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| Protein GI | 157377342 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATACTCA CACCAACTAA TAACAAGCCA TGCATCATGA ATAAAATTGA TCAACTTAAT
TACAATCAAT TAAAAGTATT TATTGCTATA TACGAGCATG GACAAAGTCA TCAAGCTGCA
AATGAATTAG GCATGACAGC TTCCGGCGTA AGTAGAACAT TAAAAATACT ACGGGATATA
TTTAAAGATT CACTCTTTAT ACGCCGCACT TCCGGTTTTA TCGCCACCGA AAAAACACAT
CAGTTAATTC CAATGGCTAA AGCCTTAGTT GCACAGTATC AAAAAATAGA AATGCAGCAT
TCAGTTTTCA CTCCCGCAGA GTCAGGAGGC CAGTATACGA TTCACGCTTA CGATGAATTT
GTCTACGCCG TCCAAAAAGT GATACGCAAT GACATCCTAT TGGAAGCGCC TAACTTACGT
TTCGATGTTC GCGTACTCAC CCATGATTGC AGTACCGAGC TTGCCAATGG TGATATGGAT
TTTGTCGTAG TCTATGAAGG CTTCAACGGC AAGAACCTTA ATTACGAGAT GTTTGCCGAA
ACCGACAGCT TATACCTCTT GGTTAACAAC GAACATCCCA TTCTCACTCA GGAGCTCACA
CTAGAGAATA TTTCCAATTA CTCCTGTCTT GAGATCGATA ATTATGACGA TCTTAGCTGT
CCCTTGCTGG TGAACCTTTG CCGCGAAAAA GGGCTTTCCC CCATGGAGGT GGAAGGTTAT
ACCGACAGCC TGGCTTCGGC TATCAGACTT CTCAGCGAAT CAGATGCTAT CACTTTGAGC
TGTAATCAGT TTACCCGGCA GTTCGTCAAG ATGATCCCTA AGATTCAATG TCTGAAATTG
CCCGAAGATC TCGCGCAGCA ATGCCGTATC CGTCGCCGGG AAAACCGTGA AATTGGTAAC
TATGTCCTGT ATGGAGACAC CAATAATTCC GCCGCCTTCA ACTGGGTCAA ATCCAAATTA
ATCTGCGGAT TAGAGAGAGA GTGGCGAGTC GCAAGTGAAG AGCAATAA
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| Protein sequence | MILTPTNNKP CIMNKIDQLN YNQLKVFIAI YEHGQSHQAA NELGMTASGV SRTLKILRDI
FKDSLFIRRT SGFIATEKTH QLIPMAKALV AQYQKIEMQH SVFTPAESGG QYTIHAYDEF
VYAVQKVIRN DILLEAPNLR FDVRVLTHDC STELANGDMD FVVVYEGFNG KNLNYEMFAE
TDSLYLLVNN EHPILTQELT LENISNYSCL EIDNYDDLSC PLLVNLCREK GLSPMEVEGY
TDSLASAIRL LSESDAITLS CNQFTRQFVK MIPKIQCLKL PEDLAQQCRI RRRENREIGN
YVLYGDTNNS AAFNWVKSKL ICGLEREWRV ASEEQ
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