| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4172 |
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| Symbol | |
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| ID | 5612330 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5130753 |
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| End bp | 5131799 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935131 |
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| Product | periplasmic sugar-binding protein, putative |
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| Protein accession | YP_001475904 |
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| Protein GI | 157377304 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTGA TATCTCTATT TTGTCTGCTT TGCCTGTTGT GTACCCAGGT GCAAGCTAAG
GCTGATGTGA TCTTTTTTAA CCCCGGAAAA GCGCAAGAAA GTTTCTGGGG TGATGTTGAT
CAAGCAATGG CTGAAGCGGC AAACCTAGTT GGCTTGGAAC TTGAAATCCT TCACTCCAAT
CGAGACCGTC TATTGATGAT AGATCAGGTA AATGCCTTGG TACGATCAAA GACCCTGCCT
AAATATGTTG TGCTGGTTAG CGAAGAGGCT AGTGCTTCGA AGATGCTTGA ATCATTTTAT
GGTCGGCCTG TGTATGTGGC CTTGATGCTT AATGATATCA GTAAGGAGGA GAGAGCACAG
CTTAAGCAAG ATCCGCATTG GCAGAAATTT TTACTGCCTG CGGTGGTGCC AGATAACTAC
TTTATCGGCC AAGATTCAGC GCGAGCCCTA GCTGAATCCA TGACCTCTGA ATCTCCCGAA
GTTATATGCA TTTCAGGCGA CACCCTAACT CCTGCCTCTG TAGATAGAAC GTCTGGGGCT
GCTGACTTCT TTAAGTCACA AACTCAGCTG ACTTTGCATC AAGTTGTTTA TGCCCATTGG
CGAGAGGATT CGGCATATTG GCTGACATTA AAGATGCTTA AACGCTATCC TAATCTGACA
GGTATTTGGA CCGCCAATGA CCATATGGCT TTTGGTGTAT TACGGGCACT GGAGGAGCAG
GGAATTATTG CTGGAAGAGA CATTTTCATC AGTACCGTCA ATACCTCTGA AAAAGTATTG
CGTTTGCGTC AGCAGGACAA AATCACTGCG TTAGGCGGAG GCCATTTTCT TGCAGGTGCG
GTAGTTATGG ATAAAATTGC AAAGCATCAA CACAGTGGTC AATATAGTGC TGGCTCGCCA
TTCCCGCTGT TTAGTTTATT AGAGCCCGGC AGCGAATATT TCACGGCTTT GCTTAATCGA
GATTGGAGAG CAATTATTAG TCATAAGCTC TGTCTGCCTG ATCCCGATCT AAAGCTCGGC
TGTGGTGTCT CTGTAGGTGC AAAATAG
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| Protein sequence | MKLISLFCLL CLLCTQVQAK ADVIFFNPGK AQESFWGDVD QAMAEAANLV GLELEILHSN
RDRLLMIDQV NALVRSKTLP KYVVLVSEEA SASKMLESFY GRPVYVALML NDISKEERAQ
LKQDPHWQKF LLPAVVPDNY FIGQDSARAL AESMTSESPE VICISGDTLT PASVDRTSGA
ADFFKSQTQL TLHQVVYAHW REDSAYWLTL KMLKRYPNLT GIWTANDHMA FGVLRALEEQ
GIIAGRDIFI STVNTSEKVL RLRQQDKITA LGGGHFLAGA VVMDKIAKHQ HSGQYSAGSP
FPLFSLLEPG SEYFTALLNR DWRAIISHKL CLPDPDLKLG CGVSVGAK
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