| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4146 |
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| Symbol | |
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| ID | 5609595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5094176 |
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| End bp | 5096803 |
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| Gene Length | 2628 bp |
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| Protein Length | 875 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640935105 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_001475878 |
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| Protein GI | 157377278 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00996719 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAGGG AAGAATCGAC TCAATATTCG CAATACGAAG TTGGGCGCAT GCAAAAAAGG
ATTGCGCGCC TAAAGACATT AGCTCTTAAA TACAAAAGAG CTGAAGTGAC TCAAAATATG
CTGCTTGAGA TCTCAAATCT TGCGGCTCAA GTCAATTCAC CCGAAGAGTT CTACTCAGAG
ATCCACCGTT CCCTTAATCT CCTGCTTCAT GCAGATAATT TCTTTGTCGC CTTACTCAAC
ACAGACACCA ATATCCTTGA AATTCCCTTC TTCCTGGATG AAAAAGATAC TCATCCATAC
GAGTCCTATC CTAAAGAGGC ACTATCAGAG ACCTTAGTCA GCGGAATTAC CGGTTATGTT
CTAAGAACTG GGGAATATCT GCTCTGTGAT GAGTCAAAAT TCAATGAACT GATAGAGAGC
AAACAGATAG TCAGCCGCGG AGCTCCCAGC CATCATTGGC TCGGCGTTCC CATTAAGGTC
AACAACTCGG TTGCCGGTGT CTTAGTCGTA CAAAGTTACT CGTCTAATAT CAATTTCACC
GAAATGGATA TTGAGCTGAT GAACTTCGTC AGTCATCAGA TATCTGGTGT CATGGAACGT
CTGCAACACC AAGAGCAACT CGAACAAGCG ATAGTTCAAC GAACCAAAGA ACTCAGCGTC
GCTTACGAAA AACTCAAGCA GGAGGTTTTT GAAAGGCGTC GCGCCGAACG ACTGCAACAG
TCGTTATTTG AAATTGCAGA TCTGGCAACC TCAAATATTG ATAGTAAAGT GTTTTATTCT
GAGCTTCACA GAGTCATCAG CCACCTTATA CCCGCTAACA ATTGCTATAT TGCACTGCTC
GATAAGCAGC TTTCTCATAT TAATTTTCCA TTTTACGTCA GCCAAGCCAG CTCTTGTTTA
CCCGACAGCC GAAAGGTATG TGATGGGCTT ACAGAATATG TGATTAAAAC CAGAAAACCT
CTACTGCTGC ACAACAGTGA ACTAGAGGCT CTCATCGACT CTGGTGAGAT CTATTCCAAA
ACCCCGGAGC TCAACTGCAC AAAAGATATT TATCAATGGA TTGGGATCCC TCTGTTTATT
CATGGCCAGG TTCGAGGGGC GTTGACCATC TACAGCATAA GCATTTCTCA GAGTTATCAA
GAAAAAGACC TGGAACTATT AACCTTTGTC TCTCAGCATA TCGCAACGGC AATCGAACAA
AAATTATCTG CTGAAACATT GAAAAACAGC TACGAACAGT TAGAAGAAAA AGTCGTCGAG
AGAACGCAAG CGCTCGCCAT ACTAAATCAA GACTTAGAGA ATGAGATCGC TCAGAGGCGG
AAAATAGAGC TGCAATTAGT ACACGATGCT AATCACGATA CGCTAACAGG CCTCCCTAAT
CGCGCAATGT TTATGGAGCG ACTCTCTCAA GCCGTAAAAC ACATTCGAAG ACATGGACTA
GACCGATTCG CCCTGCTATT TATCGATTTA GACAGGTTCA AGCTGATAAA CGATACTCTG
GGTCATCTCG AAGGCGATCG CTTCCTGATG GAAACCTCAT CACGACTAAA ACTCTGTATA
CGCGACAATG ATACTCTTGG CAGGATTGGC GGAGATGAGT TTGTAATCCT ACTCGACAGC
ATCAATGGAA CCGACGATGC CGAAGAGGTG GCAGAGCGTG TGCTAACCGA ACTATCACGC
CCCTACAAAC TCGCCAATCA ACATTTTATT TCCGGAGCAA GTATTGGTAT CGCTTTTAGT
CATAATCATA AGTCGGATAC CAGCGAGTCC CTGTTGCGAG ACGCCGACGC GGCCATGTAT
CAGGCCAAAA CGAATGGTAA GGGTTGCTAT GTCATATACG ATGACAAGTC TCACAAACTG
CTCAACCAAG ATGTAAAACT GGAGCTTGAA TTACAAAATG CACTCTCTAA TCATGAGCTG
CTTCTGAGTT ACCTGCCGAT TCAAAACCTT AGATCAGAGA CTACGATGGC ATTGGAGCCA
CGACTCTATT GGAACCACCC AAGACTTGGG AAAATCAAAC AGGCTCATCT GAATAATATT
GCCGAACATT GCGGGCTCAC AACCGAACTC GATATCTACC TGCTTCAGAG GCTAAATAGC
GATTACCAGG CACTGCAAAA ACACTCACTC AGTCTGTTAC CCCTGCATAT CAATATATCC
GGAAAACACC TGAAGCATAA ACATGCGGTG AGACAACTCA AAAATGCGCT CAAGCAGAGC
CGCTTCAAGG CTGAGCAGCT ATGGTTATTC TTCGATGAAC AAGGCTTTAT TCTCGATACC
GATAACCATA TCAATGCCTT TGAAATATTG ACAAGTCTGA ATGTTAATCT TGGCCTCATG
GCCTATGGAA GCGCTCACAG CGCCTTAAGC AGCCTCACCT TCCTGCCGCT ACAAGGCCTT
AAGCTCGATC CCAGCTATGC CAATCAGCTT GAAAGCAAAC AGCATATAAA GTTATTAAAG
GCTCACTTCC TGACGGCTCA AGCATTAGAG CTTACGGTCT TTGTCGATGG AATTGGTACA
ACACAACAAA GTGAGGCTCT GCAGGAGATA GGTTTCACTC TGGGACAAGG GCAGGCACTG
GGGAAAGTGT TACGGCTGAC GACAATATCG GATCTGTTTT GCGCTTAG
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| Protein sequence | MFREESTQYS QYEVGRMQKR IARLKTLALK YKRAEVTQNM LLEISNLAAQ VNSPEEFYSE
IHRSLNLLLH ADNFFVALLN TDTNILEIPF FLDEKDTHPY ESYPKEALSE TLVSGITGYV
LRTGEYLLCD ESKFNELIES KQIVSRGAPS HHWLGVPIKV NNSVAGVLVV QSYSSNINFT
EMDIELMNFV SHQISGVMER LQHQEQLEQA IVQRTKELSV AYEKLKQEVF ERRRAERLQQ
SLFEIADLAT SNIDSKVFYS ELHRVISHLI PANNCYIALL DKQLSHINFP FYVSQASSCL
PDSRKVCDGL TEYVIKTRKP LLLHNSELEA LIDSGEIYSK TPELNCTKDI YQWIGIPLFI
HGQVRGALTI YSISISQSYQ EKDLELLTFV SQHIATAIEQ KLSAETLKNS YEQLEEKVVE
RTQALAILNQ DLENEIAQRR KIELQLVHDA NHDTLTGLPN RAMFMERLSQ AVKHIRRHGL
DRFALLFIDL DRFKLINDTL GHLEGDRFLM ETSSRLKLCI RDNDTLGRIG GDEFVILLDS
INGTDDAEEV AERVLTELSR PYKLANQHFI SGASIGIAFS HNHKSDTSES LLRDADAAMY
QAKTNGKGCY VIYDDKSHKL LNQDVKLELE LQNALSNHEL LLSYLPIQNL RSETTMALEP
RLYWNHPRLG KIKQAHLNNI AEHCGLTTEL DIYLLQRLNS DYQALQKHSL SLLPLHINIS
GKHLKHKHAV RQLKNALKQS RFKAEQLWLF FDEQGFILDT DNHINAFEIL TSLNVNLGLM
AYGSAHSALS SLTFLPLQGL KLDPSYANQL ESKQHIKLLK AHFLTAQALE LTVFVDGIGT
TQQSEALQEI GFTLGQGQAL GKVLRLTTIS DLFCA
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