| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4044 |
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| Symbol | |
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| ID | 5609868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4953204 |
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| End bp | 4954277 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934999 |
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| Product | putative plasmid transfer protein |
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| Protein accession | YP_001475776 |
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| Protein GI | 157377176 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATCG AAAAGGCTGA ATGGATGAAA CTGTTCAAAC TGGCATTATG CTATCTCTTG
CTTTCCCCTC TCTCGTCATC GTTTGCAGAG CAACTGAGTG ACGAAGTTTG GGGCAATCTT
GTGCCTGCGA TGGAAGGGGC TCGGAGCCTG CCATCGAGTA GTGAAAATCC TCTATTTATT
AATCCGGCTC TGCTGGCATT AGACTCCCTT AAATTTGATG ATTCTGCCTT ATCTCTGCCG
ACGGTGGGGG CTAGCGCCTC CTATGATGCG CACGGGGATT TTTCGGTCGT GGCTGTGAAT
GAAAGCGTTC AGATGAACGT ATTTTACAAC ACTTATGCCG ATGCCATTGG TGTTAATGCA
ATCGATATCG AGGCGTTCGA GTCGTCGGAG GCTCTGAAGG TGCAGGAAGC TGAGCTTATG
GATCTCGATT CTAAAGGTAT TCTTGTTGCA GGGGCCGTTT CTGATTTTGG TGTTGCGCTA
AGTTTTCCCC TCTCAATTGT AAATATGCCG ATATCTGTTG GTGTTTCTCC AAAACTGCAA
AAGATCGATA CCTATAATTA TGAAGCGGTT ATCAATAGCT TTGAGCCTAG AGAGTTAGAT
GATGCCAGTT ATCGAAGTGA TGAAACCACA TTCAATCTGG ATATCGGTGT TGCAATGGAG
CCTGTGGAGG GGTTAGTCGT TGCCATGTCC GGGCGAGACC TGATAAGCAA AGAGTTGGAG
GCGGTAGAGT CTCAAGGCAA AACGCTTAGC TATCGAGTCG ATCCCAAATT TGCGGCTGGT
GTCGCCTATG ACTGGAATCG TCTGACTTTT ACGACGGATA TTGACCTTAA CCCTATTAAA
CGTTTCGATG AAACTGTGGG TACCCAGTAC TGGCGATTCA AAGGGGAGGT GCGAGCGACG
GATTGGTTGG CACTGCGTTT GGGTTATCGT CATGATATGA AGGACAATAG GGCAAGTGTC
TATTCATTGG GAACCGGAGT CGAACTTGGC CAGGTATTCT CTCTCGATTT CACAGGTATG
GTCAGCAGCG ATGACGCCAT CGGCGGTGTA CTGAAAACCT CTTATCATTT TTAA
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| Protein sequence | MKIEKAEWMK LFKLALCYLL LSPLSSSFAE QLSDEVWGNL VPAMEGARSL PSSSENPLFI
NPALLALDSL KFDDSALSLP TVGASASYDA HGDFSVVAVN ESVQMNVFYN TYADAIGVNA
IDIEAFESSE ALKVQEAELM DLDSKGILVA GAVSDFGVAL SFPLSIVNMP ISVGVSPKLQ
KIDTYNYEAV INSFEPRELD DASYRSDETT FNLDIGVAME PVEGLVVAMS GRDLISKELE
AVESQGKTLS YRVDPKFAAG VAYDWNRLTF TTDIDLNPIK RFDETVGTQY WRFKGEVRAT
DWLALRLGYR HDMKDNRASV YSLGTGVELG QVFSLDFTGM VSSDDAIGGV LKTSYHF
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