| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3996 |
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| Symbol | |
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| ID | 5610208 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4893419 |
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| End bp | 4893976 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934950 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475728 |
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| Protein GI | 157377128 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.41061 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTGCCAA GCGGTTGGAT CTTTTATCAG TCAAAGCATT GCGGCCTGTC GCAGCATATC
TCGTGCGAAA TGAGCCCTTG GGATCTCAAG TTTGATTCCC GGTTTGAATA CAGCAACATC
TACGTGTCGG CTCCGGCTTT GCGACAAAGC GCATGCATTA TTGTGGCTTC TGAAAAAAGC
GCAGCCTTTC ACTTCGGTCT GACAAATGAC AAGCAGATAC AGGGTCAGAG AGTTTACAGC
GCCCAGGTTA GTCAAGGGTA TCTGATCCTG ATCTTTAACC AAATTCACTG CCCAAAAATC
GACGAAGTTA AGCATTATTT TCATGACATG GTTCTGCCAT TTATTCTGCA GCAGGGACAG
ACGGAAGAGC TCAACGACCG CACCAAAACC ATTGTAAAAC TGACCGCATT GGGTTTCACC
ACCAAAGAGA TAGCCAATGC CCTCTTTCTG TCTAGTCGAG GTGTCGACTA CCACCTCGAT
ATAGCGAAAA AAACCTTGGG TGCCAGCAAT AGATCCGCAC TGGTCTTCCT GGCCATGCAG
CAAGGCTGGC TTGCCTGA
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| Protein sequence | MLPSGWIFYQ SKHCGLSQHI SCEMSPWDLK FDSRFEYSNI YVSAPALRQS ACIIVASEKS
AAFHFGLTND KQIQGQRVYS AQVSQGYLIL IFNQIHCPKI DEVKHYFHDM VLPFILQQGQ
TEELNDRTKT IVKLTALGFT TKEIANALFL SSRGVDYHLD IAKKTLGASN RSALVFLAMQ
QGWLA
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