| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3968 |
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| Symbol | |
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| ID | 5614205 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4853524 |
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| End bp | 4854435 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934922 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001475700 |
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| Protein GI | 157377100 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGATC TGAATGGTAT GATGCTGTTT GCAGCGGTTG TTAGAGCCAA AGGGTTCTCG
CAAGCCGCCC GCGAAATAGG CATGCCAAAA TCAACCATAA GTCGTAAAGT CGCTCAGCTC
GAAGAGCAAC TTGGCGTACG GCTATTACAA CGTGATACTC GAAATTTGAG CCTCACTCAG
GTTGGTGCGC TTTTTTATCA GCACTGCACC AGTATAAGCG ATGAGATTGA AGCGGCTAAG
GCGACAATCG AAAACACCCA TAATGATGTA TCCGGCTCAC TGCGTATAGC CATCCCCGTC
TCTTTTAGTC AGGAGATCAT CGCTAACCTC TGCAGCAGTT TCATGCGTCT CTATCCTAAT
GTTGAGCTCG ATGTGCAATT TACCGACAGT GAAGTTGGCC TTGTCGGCGA AGGCTATGAT
ATCGCCATCA AGTATGGCCC ACTGCAATCC TCCGACCTGG TTGCGCGTTT ACTCTTCGAG
CGTCAGCCAA TCTTAGTCGC CAGTCCCGGC TATCTGAAAA ATAACGGTAC ACCCGCGACC
CCGCAAGATC TTATGAATCA TAGCGGTATA TTGCTTGGCA CCTCCCGCTC GGCACCAATA
TGGCCGCTGG GTAAAGGCGC CAGAAAAACC ATGGTTAACT TTAAGCGTAA AGTCAGAGTG
AATAGCGCCG TCATGGTCAA GCAGCTGGTT CAGGATGACT TTGGCATCGC CATGTTATCT
AATTCGGTGT GTAAAAATGA ACTTGCCAGT GGTGCACTCG TACCTATTCT GCAGGAGTGG
CCGATAGAAG CATTTAAGGT CTATGGTGTC TATTCGAGCA GACGACAACT CGCCACCAAT
ATCAGCGTCT TTCTGGACTT CTTCACCAAA CGTTTCAGCA GTCATGAATC ACTGCAATCT
TTAATGGTGT AA
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| Protein sequence | MPDLNGMMLF AAVVRAKGFS QAAREIGMPK STISRKVAQL EEQLGVRLLQ RDTRNLSLTQ
VGALFYQHCT SISDEIEAAK ATIENTHNDV SGSLRIAIPV SFSQEIIANL CSSFMRLYPN
VELDVQFTDS EVGLVGEGYD IAIKYGPLQS SDLVARLLFE RQPILVASPG YLKNNGTPAT
PQDLMNHSGI LLGTSRSAPI WPLGKGARKT MVNFKRKVRV NSAVMVKQLV QDDFGIAMLS
NSVCKNELAS GALVPILQEW PIEAFKVYGV YSSRRQLATN ISVFLDFFTK RFSSHESLQS
LMV
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