| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3962 |
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| Symbol | |
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| ID | 5613116 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4841853 |
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| End bp | 4844441 |
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| Gene Length | 2589 bp |
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| Protein Length | 862 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934916 |
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| Product | ATPase, P-type (transporting), HAD superfamily, subfamily IC |
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| Protein accession | YP_001475694 |
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| Protein GI | 157377094 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0474] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0368471 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACAACGC AGGGACTCAG CAGTGAAAAG GCACAAGCTC TATTGACAGA GTATGGCGAG
AATTGTTTGC CAAAACCGTC AAGAAACAGC TTTGTCCGGC TCTTTATTAT CCAGTTTCGT
AGCGCATTTA TCTATGTCCT GCTGGTGGCT GTTGTCGTGT GCCTGATACT CGGACAGCTG
ATCAATGCTT TTTTTATCTC TGTGGTGCTA TTGCTCAATG CGCTGATTGG CACCATTCAG
GAATATTCTG CCCAGCAGGC TGCCGATGCC CTCGCCGATA TGGTCCCCCA ACAGAGCCGT
GTTATTCGCG ATAATCATCC GGTTGTCGTC GATAGTCGCT CTCTGGTGCC GGGCGATTGG
ATCATGCTCA GTAGCGGAGA CCGTATAGGG GCCGATATTG ATCTGAGGCA ATCCAGCCAG
TTTCAAGTCG ATGAGTCAGC CCTCACGGGT GAGTCGATTT CAGTCAGTAA CAAAGAACAA
GCCTTTGCCG GCACGCTGGT GACCCACGGC CGTGCAGAGG GTGAAGTGAT CGCTACCGGA
ATCAATACTC AGATTGGACA GATAGCCAAA TTAGTCCATC AGGGAGTCGA TACTAAGCCT
CCATTAATGC AGAGAATCGA TCAGTTTACC CTGCGTATAG CCATTGCCAT AGTGATCATC
ATAGCGCTGA TATTTAGTCT GACACTCATA CGAGGCGCCG ATCTGTCCGA TGTGTTCTTG
TTAGGGGTCG CATTAGCCGT CTCAGCCATT CCCGAAGGCT TACCTGCGGC TATTACTGTA
GCCCTGGCTA TAGGTATGAA ACGCATGGCG AAAGCCAACG TGATCGTACG TAAGTTGGTT
GCCGTAGAGT CACTGGGATC CTGCACCTTT ATCGCCTCAG ATAAAACCGG CACCTTGACG
GTCAATGAGA TGACCATAGG CCAGATCTGG CTTGCCAACG AACATAAGTA CCATGTGGCG
GGAGAAGGGC TAGCCCAGAA TGGCTTAGTG CATCGTCACG GACATGGAGT TCCCGTCACG
GTGGAGGAGG AGTTAGGGCT GAAGCAACTG ACCCTGGTAG GGCTACTTGC CAATGAGGCA
CACCTTGTAT ACAACACCGA TAAGATTCAC GCCGATGGAG ACGGCGTAGA TCTGGCATTC
CTTGTATTGG GACACAAGCT CAGGCTAACG AGCGAACTTG AAAACCATAC TCAGTTAACC
CTCTTTCCCT ACGAGTCCGA AAAAGGGTTC AGCGCCAGTG TCAACAATAG CCCGCTAGGC
CCACAGATCT CCGTGAAAGG TGCAGTAGAG AAAGTGATGA CCATGTGCAG CCTGAGCGAA
GAGATGAGTC AGAAAATTCT GGATCAGACC CACTGGATGG CCAGACATGG GTATCGGGTA
CTCGCACTGG CTCATGGTGC AGGAACCGCG GAAAGTGACG CGTTCACCGG GCTGGAATTT
CTTGGTCTGG TCGCCATGAG CGATCCTCTC AGACATGATG CCATAGAAGC CGTGGCATCG
TGTCGCCAAG CACAAATTAA GGTCGCGATG ATAACAGGCG ATCATCCGGT CACCGCGCTG
ACATTGTCAC AACAGCTTAA AATCGTCAGC GAACATGATA AGGCGGTGAC GGGCAGTGAA
CTCAGTCAGG CAATGGCTCT TAATGAAAGC GAATTTGATA GACTCGTGGC GACCCATAGA
GTATTTGCCA GGGTCAAACC CGAGCAGAAA ATGGAGATCA CTCAGTCGCT TATCAGGCAG
GGAGAGTTTG TAGCCATGAC CGGAGATGGC GTCAATGATG CCCCGGCATT GAAACACGCT
CATGTTGGTA TTTCGATGGG ACTGAGGGGT ACCGACGTTG CGAGAGAGAG CGCCTCACTC
GTACTCACAG ATGATAACTT CAGCTCTATC GTTAAGGGGG TCATCGAAGG TCGGATCGTG
TACAACAATA TCCGCAAGGT TATTTTCTTG CTGGTCAGTA CCGGCGCTGC GGAAATATTT
CTCTTCATCC TAAGTGTACT CTTCGCATTG CCCATTCCAC TGTTTCCACT GCAGATACTC
TGGCTGAATT TAGTGACTAA TGGGGTTCAG GATGTTGCAC TGGCCTTCGA ACCCGCAGAG
GGTAATGAGT TTTCTCAACC GCCGCGAGCT CCTAAGGAAC CCATTTTCGA CCGACTCATG
TTGGAAAGGG TCTGCATCAG CGCTCTGGTC ATGGGGTTAA TCGCCTTCGG CCTGTTCGCG
ATATCTCTCC AGATGGGGGT TAGCGAAGAA GCGGCCCGAA ACCTGACCTT AATGTTGATG
GTATTATTTG AAAATGTACA TGCACTCAAC AGCCGCTCAG AGCATAGATC CTTATTTGTC
GTCCCCTTCT TCAGCAACCC AATATTACTG CTGGGTATTT TCGTGGCTCA GGGGATCCAC
ATCGGCGCCA TGTATACGCC AGGCCTGAGC GATGCGCTAC AGCTCAGTCC CATCAATTTT
TCCCATTGGT TGATTCTACT GGCCACCGCC TCAGTGCTTT TCATCGTGGA TGAGGTACAC
AAGAAGCGAT GGCGAATGAG GGCTAATCCG AACTTAGGGG AGCCAATAAC TGATCGTCGG
CCGGAATAA
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| Protein sequence | MTTQGLSSEK AQALLTEYGE NCLPKPSRNS FVRLFIIQFR SAFIYVLLVA VVVCLILGQL
INAFFISVVL LLNALIGTIQ EYSAQQAADA LADMVPQQSR VIRDNHPVVV DSRSLVPGDW
IMLSSGDRIG ADIDLRQSSQ FQVDESALTG ESISVSNKEQ AFAGTLVTHG RAEGEVIATG
INTQIGQIAK LVHQGVDTKP PLMQRIDQFT LRIAIAIVII IALIFSLTLI RGADLSDVFL
LGVALAVSAI PEGLPAAITV ALAIGMKRMA KANVIVRKLV AVESLGSCTF IASDKTGTLT
VNEMTIGQIW LANEHKYHVA GEGLAQNGLV HRHGHGVPVT VEEELGLKQL TLVGLLANEA
HLVYNTDKIH ADGDGVDLAF LVLGHKLRLT SELENHTQLT LFPYESEKGF SASVNNSPLG
PQISVKGAVE KVMTMCSLSE EMSQKILDQT HWMARHGYRV LALAHGAGTA ESDAFTGLEF
LGLVAMSDPL RHDAIEAVAS CRQAQIKVAM ITGDHPVTAL TLSQQLKIVS EHDKAVTGSE
LSQAMALNES EFDRLVATHR VFARVKPEQK MEITQSLIRQ GEFVAMTGDG VNDAPALKHA
HVGISMGLRG TDVARESASL VLTDDNFSSI VKGVIEGRIV YNNIRKVIFL LVSTGAAEIF
LFILSVLFAL PIPLFPLQIL WLNLVTNGVQ DVALAFEPAE GNEFSQPPRA PKEPIFDRLM
LERVCISALV MGLIAFGLFA ISLQMGVSEE AARNLTLMLM VLFENVHALN SRSEHRSLFV
VPFFSNPILL LGIFVAQGIH IGAMYTPGLS DALQLSPINF SHWLILLATA SVLFIVDEVH
KKRWRMRANP NLGEPITDRR PE
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