Gene Ssed_3946 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3946 
Symbol 
ID5611533 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand- 
Start bp4823883 
End bp4824494 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content46% 
IMG OID640934900 
Producthypothetical protein 
Protein accessionYP_001475678 
Protein GI157377078 
COG category[S] Function unknown 
COG ID[COG3647] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0184701 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.814142 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAATAAAC GCGTCATCTG GCTAATCGTT TTTTTCTCTG TACTGATCTG GTCGGCTATA 
GGGCCGAAGG ATCAGTTCAC CTGGTTTCTT GAGGTCTTGC CGGCATTAAT CGCTCTACCT 
GTGCTATTTT TTAGCCGCAA TCGCTTCCCG ATGAGCCCTT TGGCTTACCT GCTTATATTG 
ATCCATTGTG TCATCCTGAT GGTAGGCGGT CATTATACCT ATGCTGAGGT TCCACTTTTT 
GATTGGATAT CACAACTTGT TGATGGAGAT AGAAATAATT ACGACAAGCT GGGCCATTTA 
GCTCAAGGTT TTGTCCCTGT TATATTAGCC AGAGAGATAT TTATCAGAAG GGAGGTGGTG 
AAGCCGGGTC ACTGGTGCAA TTTTTTGGCT GTCTGTTTCG CCCTCGCATT CTCGGCTTTC 
TATGAACTGA TTGAGTGGTG GGTCGCACTG TTAACCGGTG AAGATGCCGA AGCATTTCTC 
GGCACTCAAG GTTATATCTG GGACACTCAA TCTGATATGG GGATGGCGCT GTTGGGTGCG 
GTTATGAGTG TGCTTCTATT ATCACGGCTT CACGATAAAC AGATCTGCCA ACTTAAACTA 
GGTACTCCAT AG
 
Protein sequence
MNKRVIWLIV FFSVLIWSAI GPKDQFTWFL EVLPALIALP VLFFSRNRFP MSPLAYLLIL 
IHCVILMVGG HYTYAEVPLF DWISQLVDGD RNNYDKLGHL AQGFVPVILA REIFIRREVV 
KPGHWCNFLA VCFALAFSAF YELIEWWVAL LTGEDAEAFL GTQGYIWDTQ SDMGMALLGA 
VMSVLLLSRL HDKQICQLKL GTP