| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3920 |
|---|
| Symbol | |
|---|
| ID | 5611744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4789960 |
|---|
| End bp | 4790700 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640934874 |
|---|
| Product | putative amino acid-binding protein |
|---|
| Protein accession | YP_001475652 |
|---|
| Protein GI | 157377052 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATAG GTAAAATTTT AACAGCAGTA CTGCTTTGGG TATCGACATT TCCCCTATTC
GCGGCAGAGG TCACTATGGC ATTCGGCGAA AAGATCCCCC CCTTCTGTTT TCCCGCCACC
GATTCGGGGA TTGAAGTGGA GGTGATAGGT GAAGCCCTGG CCTATCGTGG TCACATACTG
AAACCGGAGT ATTACCCCTT TGCCAGGATC CCGGTCACCT TTTTAGCGCA CAATGTCGAT
GCAGCCATGA CCGACTTAGG CCGGGATATG GAGCCAGAGG GCGCGTTATA TGGCGATCCA
GCCGTATTTT ATGACAATGT TTTTATCACC CTCAAAGAGC GTAATATCAT CATCGAGAAG
CCCGAAGATC TACAGGGCTT GAGCGTGATA GCCTTTTATG GTGCCGCCAA GCGATACCCG
AAGTGGCTTA AGAATGTTCA GGAGTCCAAC CTCTACCACG AACAAAATAA CCAGTCTTTA
CAGGCGCTAA CACTCAACAG GCAGCATTAT GATGTGGTGC TCAGCGATCG TAATATTTTC
AATTACTTCA CTTTGCACCT ACAACGAGAA AAAGGATTTA AGCCTAAGCC TGTAGAGGAG
CATCATTTTG TTGAATTGAA CCCTATGGAT TATCGACCGG TATTTTGGGA CGAACATATT
CGAGATGACT TCAATGCCGG GCTAAAACAC CTCAAAGAGA CGGGGCGTTA CCAGGCTATC
TACGACAAAT ACCTGAAATA A
|
|---|
| Protein sequence | MNIGKILTAV LLWVSTFPLF AAEVTMAFGE KIPPFCFPAT DSGIEVEVIG EALAYRGHIL
KPEYYPFARI PVTFLAHNVD AAMTDLGRDM EPEGALYGDP AVFYDNVFIT LKERNIIIEK
PEDLQGLSVI AFYGAAKRYP KWLKNVQESN LYHEQNNQSL QALTLNRQHY DVVLSDRNIF
NYFTLHLQRE KGFKPKPVEE HHFVELNPMD YRPVFWDEHI RDDFNAGLKH LKETGRYQAI
YDKYLK
|
|---|
| |