Gene Ssed_3896 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3896 
Symbol 
ID5611704 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand+ 
Start bp4765585 
End bp4766259 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content49% 
IMG OID640934850 
Product2'-5' RNA ligase 
Protein accessionYP_001475628 
Protein GI157377028 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.0415456 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.638884 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGAT TATTTTTAGG CATATCACCC AATGCGCTGC AGCTCGAACA ACTGCTCAAG 
ATCCAGGCCG CCCTTTTCGA AGCTGGTGAT AAAGAGAGGA CTTTGGTGGG GCGAGATGCC 
GACAAAAACT CTGGTAGCCA TCAATACACA TGCGTCGGTC GCAGGGTCAA CAAGCAGAAT 
TTTCACATGA CGCTCGCCTT CTTAGGAGCC GTCAGCGATG AGATGCAAGC GCAACTGGAG 
TCGACACTGG ACAGCTTCTA CGCCATCAAC GCCAGCCAAT GGCCCTCCTT CGATGTAACA 
TTAGATACAC TGACGCTCTG GCGAAAACCT CAGGTGCTCT GTCTGTCGGG AAAAGCGGAT 
GACCCGAATC TGCAAATAGC AGTAGACAGA TGCAGATATG CCGCTAAAGA GGCTGGGCTT 
TTCAGCGGTA AAACAAACAA GACTAAGACA AGTGATGAGC TTACCTTTAC CCCACATATC 
ACCCTATTTA GAAAAGCAAA GAGGATACCT GAGGATCATC TGCCGCAAAC GGGGTTATTA 
CAGTCCGAAT TAATGGAAAA GTCACTCATA CCTGTGACAC TCTCGCCACA GCAGATGCAC 
CTCTACGAGT CGCTCAGCAC AGCTAAGGGA GTTGAATATC GTATCTTGCG ATCCTGGGCA 
CTGGTTAAAG CCTAA
 
Protein sequence
MKRLFLGISP NALQLEQLLK IQAALFEAGD KERTLVGRDA DKNSGSHQYT CVGRRVNKQN 
FHMTLAFLGA VSDEMQAQLE STLDSFYAIN ASQWPSFDVT LDTLTLWRKP QVLCLSGKAD 
DPNLQIAVDR CRYAAKEAGL FSGKTNKTKT SDELTFTPHI TLFRKAKRIP EDHLPQTGLL 
QSELMEKSLI PVTLSPQQMH LYESLSTAKG VEYRILRSWA LVKA