| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3852 |
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| Symbol | |
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| ID | 5611656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4698726 |
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| End bp | 4700102 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934806 |
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| Product | ATP-dependent RNA helicase DbpA |
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| Protein accession | YP_001475584 |
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| Protein GI | 157376984 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.02646 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATTTT CGACATTAAC GCTAAAACCT GAACTACTCG ATAACCTGAA AACAATGGGT
TACGACTCGA TGACGCCAAT TCAGGCGCAG AGTTTACCTG CGATCTTAAA TGGTGAAGAT
GTTATCGGCC AGGGTAAGAC CGGCTCAGGT AAAACGGCGG CCTTTGGTTT GGGTCTATTG
CACAAGTTAA ACGTAAAGCG TTTCCGTATT CAATCTTTGG TATTGTGCCC GACTCGAGAG
CTTGCCGATC AAGTAGCGAA AGAGATCCGT ACGCTTGCCC GTGGTATCCA CAATATCAAG
GTCTTGACCC TATGTGGCGG CGTACCTATG GGGCCGCAGA TCGGATCTTT AGAGCATGGC
GCACATATTA TTGTTGGAAC ACCAGGCCGA ATTATCGATC ACCTGTCACG TGAACGTTTA
AGCCTTGAAG ATGTGAATAC CTTAGTGCTG GATGAAGCGG ATCGTATGTT AGAGATGGGC
TTCTTGCCAG ATCTTGACTA CATCATGGCT CAGATGCCAC GTGAACGTCA GACATTGCTG
TTTAGCGCGA CGTTCCCTAA GCAGATCCAA AAGATCGCCG AAGAGATCAT GTATGAGCCT
GTGATGGTCA AGGTGACATC GACTCATGAC AGTAGCAGTA TCGACCAGCA TTTCTATCAG
ATAGATAGCA ACAAAGACCG TCAGAAGGCC CTGCGCCTGT TATTATTGCA GCATAGACCG
GAGAGCGCCG TTGTATTTTG TAATACCAAG CGTGAGACCA AAGACGTGGC CGCGACTCTG
GCCAATGATG GTTTCAGTGT GGTGGCACTC CATGGCGATC TGGAGCAGAG AGATAGAGAC
ATCACCCTGA TGCAGTTTGC CAACAAGAGT GCCTCTATCA TGGTGGCAAC CGATGTCGCC
GCTCGAGGTC TGGATATCGA AGCCTTGGAT ATGGTGATTA ACTACGAATT CGCCTTCGAC
ACCGAAGTGC ATATTCACCG CATCGGTCGT ACCGGCCGTG CCGGCAGCAA GGGCGCCGCC
TTTACCTTCT ACACCTATGA CGATGACTAT AAGATCAAGC TGTTAGAAGA GTATCTCGAC
CATGATATCG TCAGCGAAGG CCTGCCGCCT GAGAACCTGC TCGATACCCT CCCGACTCAA
CCTAAGATGG TAACTCTGCA GATCGATGGT GGTAAGAAGC ATAAGGTACG CCCTGGCGAT
ATCTTAGGTG CGCTAACTGG CGAAGATGGC ATTCAAGGCT CCGAGGTCGG TAAGATTAAG
ATCACCGAAT TCCGCTCATA TGTCGCGGTT GACCGTAAAG TGGCTAAGCG TGCTCTGCAT
AAGATCACCA ACGGCAAACT CAAAGGCCGC AATTATCGTG CCTGGGAGAT GCGCTAG
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| Protein sequence | MSFSTLTLKP ELLDNLKTMG YDSMTPIQAQ SLPAILNGED VIGQGKTGSG KTAAFGLGLL
HKLNVKRFRI QSLVLCPTRE LADQVAKEIR TLARGIHNIK VLTLCGGVPM GPQIGSLEHG
AHIIVGTPGR IIDHLSRERL SLEDVNTLVL DEADRMLEMG FLPDLDYIMA QMPRERQTLL
FSATFPKQIQ KIAEEIMYEP VMVKVTSTHD SSSIDQHFYQ IDSNKDRQKA LRLLLLQHRP
ESAVVFCNTK RETKDVAATL ANDGFSVVAL HGDLEQRDRD ITLMQFANKS ASIMVATDVA
ARGLDIEALD MVINYEFAFD TEVHIHRIGR TGRAGSKGAA FTFYTYDDDY KIKLLEEYLD
HDIVSEGLPP ENLLDTLPTQ PKMVTLQIDG GKKHKVRPGD ILGALTGEDG IQGSEVGKIK
ITEFRSYVAV DRKVAKRALH KITNGKLKGR NYRAWEMR
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