| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3838 |
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| Symbol | |
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| ID | 5612741 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4679939 |
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| End bp | 4680625 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934792 |
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| Product | phage shock protein A, PspA |
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| Protein accession | YP_001475570 |
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| Protein GI | 157376970 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1842] Phage shock protein A (IM30), suppresses sigma54-dependent transcription |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.867887 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000000015087 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGGCATAC TAAACAAGAT TTTAACCGCT TTTCGTGGTG GTGCAACAGA AGTTGGTCAA
GGCATCGTCG ATGCAAACTC TACTCGTATC TTCGAGCAAG AGATCCGTGA TGCGGAAAAC
CACCTGACAA AAGCTAAACG TGAATTAACT GACGTTATGG CCAAAGAGAT GCAGGCCAGC
CGCGAAATAG ACCGCTTAAA GCGCTCCATC AGCGAACATG AAGGCTATGC CACTCAAGCA
CTCGAGAAAG AGAATGAAAC CTTAGCGATG GAAGTGGCTG AGAAGATCTC TCAACTAGAC
CAGGAGCTTG CAGAGCAAGA AGGTGCAAAC GTTAACTTCA CTGCTCATGC GACTCGTCTT
AAAGACCTCG TGCGTAAAAC TGAGCGCCAG CTAACTGATT ACCAACGTCA ACTGAGCATG
GTAAAGACCA CTGAGAGTGT TCAAAAGGCA ACGGCTAGCA TCACAGACTC TTTCGCAGGT
AGCAGCTCTA AGCTATTAAA TGCTAAAGAT TCACTGGAGC GTATCAAGGC TCGTCAGCAG
CAGTTTGATG ACCGTCTGGT CGCAGCTGAG CAACTTGCCG ATGAAAACAG TGATAAGTCA
CTACACGATA AACTTGCGGA AGCGGGCATT GGCGAGCAAA AATCGAATGC TAATGCAGTA
CTTGATCGCC TGAAAGCGCG CAAGTAA
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| Protein sequence | MGILNKILTA FRGGATEVGQ GIVDANSTRI FEQEIRDAEN HLTKAKRELT DVMAKEMQAS
REIDRLKRSI SEHEGYATQA LEKENETLAM EVAEKISQLD QELAEQEGAN VNFTAHATRL
KDLVRKTERQ LTDYQRQLSM VKTTESVQKA TASITDSFAG SSSKLLNAKD SLERIKARQQ
QFDDRLVAAE QLADENSDKS LHDKLAEAGI GEQKSNANAV LDRLKARK
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