| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3742 |
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| Symbol | |
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| ID | 5611230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4556551 |
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| End bp | 4557429 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934696 |
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| Product | putative transcriptional regulator |
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| Protein accession | YP_001475474 |
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| Protein GI | 157376874 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATAATT TGGAACAGCT GAGAATGTTT GTAGAGACGG CACAATCTGG GTCGTTCTCG
GCATGCGCTC GTCGGTTGGG CAAGGTGCAG TCGGCGGTGA GTCAGGGGAT TGCAAATCTC
GAAATTGAGC TCAATACGAC GCTGTTTGAT CGTACCAGCC GTAAACCATC ATTAACCCCT
CACGGTGAGA GATTATTACC GTTTGCTCAA GCCATTCTGC AACAAACTTA TGAGCTTGAC
TCGGTGACCA ACGCCCTGAA TTTATCCCAT GAAACACAGA TAAAAATGGC GGTGGACGAT
GCGTTGCTTC CTGTGACAAC GAGCATTCTG AATACTTTTG CAACGCGTTT CCCTGGCACC
ATTTTGGAGC TTTACGCCGT TTCAACACCC GATGTGTTAA CTCTGGTACA CACTGGACGA
GCGGATTTAG GATTGATGTT TGCGAATAGC GATTTCCCGC AAGAAGTGGA TTTGTGTTAT
GTCGGTAGCT TGCCGTTTAA TGGCGTCGTG AGCCCTACGC ATCCACTGGC AAACATGGAC
ATAGTCACAG TTGCGGATTT GATCCCACAT CGTCAACTGT TGATCCGTGG CCTTGATGGT
CAGGCCTTGG CGCACTGCCC TAGTATCTCT TCACATATCT GGTGGGGAAA TACCTTTAAT
GCCGTTAACA CTATGGTAAA AGAGGGGCTG GGATGGAGTT ATATTCCCGC TTATATGGCA
GAGCGATATG AGCATCAGGG TGACATGGTG CGAATGAATC TAAGCTTTGA TCATAAGCCG
TGGCGAGTGC CGATTGATCG TGTGATGGCA AAACAAAAGG CGAAAGGCCC CGCCTTAATG
TGGTTGGCTG ATGCTATCGT CAATGTGTTG GATGAATAG
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| Protein sequence | MYNLEQLRMF VETAQSGSFS ACARRLGKVQ SAVSQGIANL EIELNTTLFD RTSRKPSLTP
HGERLLPFAQ AILQQTYELD SVTNALNLSH ETQIKMAVDD ALLPVTTSIL NTFATRFPGT
ILELYAVSTP DVLTLVHTGR ADLGLMFANS DFPQEVDLCY VGSLPFNGVV SPTHPLANMD
IVTVADLIPH RQLLIRGLDG QALAHCPSIS SHIWWGNTFN AVNTMVKEGL GWSYIPAYMA
ERYEHQGDMV RMNLSFDHKP WRVPIDRVMA KQKAKGPALM WLADAIVNVL DE
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