| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3708 |
|---|
| Symbol | |
|---|
| ID | 5610859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4513118 |
|---|
| End bp | 4514509 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640934661 |
|---|
| Product | putative glutamate-1-semialdehyde-2,1-aminomutase |
|---|
| Protein accession | YP_001475440 |
|---|
| Protein GI | 157376840 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0001] Glutamate-1-semialdehyde aminotransferase |
|---|
| TIGRFAM ID | [TIGR00713] glutamate-1-semialdehyde-2,1-aminomutase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGATA ACCAGAACAT TATCCATAAC ACTAATAGCA AGAATAATAA CGACAATAAA
AAAGTATCTC CCGACCGCAG CGCCGAACTC TACAGTAAGG CGCTAACCTT GATGCCGGGT
GGCTGCAGCC GTAATACTGT ACTCAGAAGC CCGAACCCGC TCTATGCAGA GTCGGCAAAG
GGCTGTTATG TCACCGATAT CGAAGGTGTG ACGCGCGTCG ATTTTGCCAA TAACATGGCG
GCTCTTATCC ATGGGCATGC TCACCCTAAG ATTGTCGCCA ATGTGACCGA ACAACTCAAT
AAAGGCAGTG CGTTTACCTT AGCGACCGAA GTTGAGATCG ATTATGCCGA GCACTTGTGT
AGTCGCAATG CAGGCTTTGA GAAGATCCGT TTTGTCAACT CAGGCACCGA AGCGGTGATG
AGCTGCCTGA AGGCCGCAAG GGCCTATACC GGAAGGCCTA AAATAGCCAA GGTTGAGGGC
GCTTATCATG GCCTCTATGA TCATGCAGAG GTGAGTCAAA CAGCCAGCCC TGCTAATTGG
GGAGATGAGT CAAATCCCAA TAGTGTGCCC GTCGCCTTCG GTACACCCGA AGCCACGCTT
AACGATGTGG TGGTGATCCC GTTTAACGAT GTTGAGCGGG CCATCACCAT CTTAGATAAG
CACAAGGGTG AGTTAGCCTG TGTGCTGGTG GATCTTCTGC CTCACCGTGT CGGGCTTATT
CCTGCCTCGC AGGAGTTTGT GGTTGCGCTT AGGGAGTGGA CGACGAAACA CAATGCCCTG
TTAGTGTTCG ATGAGGTGAT CACCTTCCGC AATGGTTATG GCGGGGCACA GGATAAGTAT
CCCATTAACC CGGATCTGAC CGCCATGGGC AAGATGATTG GGGGAGGTTT CCCGGTCGGT
GCACTGGCTG GTCGCGCTAA GGTGATGGAT GTGATGAATC CTCTCAATGA TAAGGTGTTG
TTCCCTCACT CCGGCACATT CTCGGCGAAT CCCGTGACTA TGGTGGCGGG CTTAACCGCC
ATGACACTGT TCGATCGAGA AGCGGTGACT AAACTGAATG AGTTAGGCGA GCAGCTGCGC
TCTCAAATCA CCGAGGTTAT TGCGATTGCG GACGTCCCCG CTTGTGTCAC CGGTGACGGT
TCCATGTTCC GAATTCATAT GAAGGCTAAC CCCCCGAAGA ACTATCGTGC CTCTTTTGCC
GATGCTAAGG AGAGCCGTAT CAGAACTGCG CTGGTGGACC ACCTGTTTGA TAACGGATTT
ATGATGATCA ACACCTGCTC GGGCACGCTT TCGACCGAGA TGACAGGTAA AGAGATAAAC
CAATTTACTC AGGTCTTACT GGATGGGCTT CGTAAGATTA AACCACTGTT TTCATCTGTA
GAAGGTCATT AA
|
|---|
| Protein sequence | MEDNQNIIHN TNSKNNNDNK KVSPDRSAEL YSKALTLMPG GCSRNTVLRS PNPLYAESAK
GCYVTDIEGV TRVDFANNMA ALIHGHAHPK IVANVTEQLN KGSAFTLATE VEIDYAEHLC
SRNAGFEKIR FVNSGTEAVM SCLKAARAYT GRPKIAKVEG AYHGLYDHAE VSQTASPANW
GDESNPNSVP VAFGTPEATL NDVVVIPFND VERAITILDK HKGELACVLV DLLPHRVGLI
PASQEFVVAL REWTTKHNAL LVFDEVITFR NGYGGAQDKY PINPDLTAMG KMIGGGFPVG
ALAGRAKVMD VMNPLNDKVL FPHSGTFSAN PVTMVAGLTA MTLFDREAVT KLNELGEQLR
SQITEVIAIA DVPACVTGDG SMFRIHMKAN PPKNYRASFA DAKESRIRTA LVDHLFDNGF
MMINTCSGTL STEMTGKEIN QFTQVLLDGL RKIKPLFSSV EGH
|
|---|
| |