Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3703 |
Symbol | |
ID | 5610141 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4506716 |
End bp | 4508257 |
Gene Length | 1542 bp |
Protein Length | 513 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640934656 |
Product | membrane-flanked domain-containing protein |
Protein accession | YP_001475435 |
Protein GI | 157376835 |
COG category | [S] Function unknown |
COG ID | [COG3428] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.41247 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCCGT TACTCCCTCA GTGGAAGGGC CTGTCTCCGT GGTCAATAGT AAGTTTTACC TTTAACACCA TTCGTATCCT GGTAACGAAC GGCTATGCCA TGGTGCCTTT CATCTATACG GGTTGGAAGC AGGGATTTGA TTCTCCCTGG ATGATTATAG CCCTTGTCGG GGTATGTTTA CTGATCCTCA TCAGCGCGAT TATAGACTGG GCCATGTTTC GCTATCGCCT GTTCGATGAC AAGTTGGGTA TTCGCCAGGG GCTAATTTTT AAGAAGGCTC ATGAAATCCC CCTAAGCAAG ATTCAAAACA TCCGTCTGGA ACAGCCCCTC TATTTTAGGC CGATGGGCCT CTATAGTTTA GTGGTTGAAA CTGCGGGATC GAAGAAAGAT GAAGCCGTAT TAGCCGCCGT CAGTTATCAA CAAGCCATTG AACTCAAACA GCGGCTGGTT AATCCACAGC ACTCTTTCGA TTCAGGGTCA GACAGCAAGG CCGAAACACA CCAGCACTCA ACGTCAAATC AAACCGGGAC AGAGGTGAGT CCGGCGAATA ACCAAGCCCC CTTGGTGTTG AAAAAGATGA AATCACTGTT ACTGTTCGGT TTCTATCAAA ATAATCTATT TTGGTTTGCC ATCATCGCAG GCCCTATTAT CGGTCAGTTT GATTGGGAAG CCCTGGCAAA TACCGACCAA GCCCTGGGTG TGATGCATTG GTATGAGCAA GCCATCGCCG TCAATATGCT GCTCCAGTTT ATCTTCGCCA GCTCACTAAT TATCGGCTTT TATCTGTTAC TTTCACTGAT ATCTATGACA GCATCCGTAC TCAAGTATTA TCCCTATCGG CTGAGTTTAA GTGGAGATAC ACTGCATAGA ACCGGCGGGA TAATAGCTAA GCAAAATGAC GCCCTGACGC AACATCGCAT ACAGGTCATT CGCTTTACTC AGCCCATTAT CGGTCGCTTT CTCAAGCTAT GGACAATTAA CTTCAAACAG GTCAAAGGGA CCGAGGTTGA ACAGGTCGCG AAGAAGCATA TGCTGGTCCC CAGTATGACA AGAGAGGCCA TCGAAGCGTT AATGCCTAAA CTGCCGGGGT TAGTCTCTGT GAGTTCGAGT CTGCCTCACT CCTACTCTCG GATCCATCTT GGTTGGTTTT GGCGTCGAGG CTTTTTGCCA CTGCTCATCC CCATGGTAAA TACCTTATTT CTGGGTCTGA ACCCCTTCAC TGAGCTATTA TGGTTTGCGG CCATCTGCTT TGTGGTTGGC CTCTATTTGA GGTATCGCCA ATGGGGTTAC CTGCATCGGG GAGATGATTG CTGGGTCCAT ACGGGTATGC TCGGACAAAC CTGGCACCTT ATCGCACTGA AAAAAGTTCA ACATGTGGCC ATTACTCAAA CCCCGAGCCA GAAACGAAAA CAGTTGGCCA GCCTGGAACT GGGACTTGCC AGCGGTCCCC TGACCATCCC CTATATGCCC TTGGGTGATG CCAGAGCTAT CGCCGAACGT GCATTAGCGA TAACCGCCAA AGACCATACG AACTGGATCT AA
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Protein sequence | MSPLLPQWKG LSPWSIVSFT FNTIRILVTN GYAMVPFIYT GWKQGFDSPW MIIALVGVCL LILISAIIDW AMFRYRLFDD KLGIRQGLIF KKAHEIPLSK IQNIRLEQPL YFRPMGLYSL VVETAGSKKD EAVLAAVSYQ QAIELKQRLV NPQHSFDSGS DSKAETHQHS TSNQTGTEVS PANNQAPLVL KKMKSLLLFG FYQNNLFWFA IIAGPIIGQF DWEALANTDQ ALGVMHWYEQ AIAVNMLLQF IFASSLIIGF YLLLSLISMT ASVLKYYPYR LSLSGDTLHR TGGIIAKQND ALTQHRIQVI RFTQPIIGRF LKLWTINFKQ VKGTEVEQVA KKHMLVPSMT REAIEALMPK LPGLVSVSSS LPHSYSRIHL GWFWRRGFLP LLIPMVNTLF LGLNPFTELL WFAAICFVVG LYLRYRQWGY LHRGDDCWVH TGMLGQTWHL IALKKVQHVA ITQTPSQKRK QLASLELGLA SGPLTIPYMP LGDARAIAER ALAITAKDHT NWI
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