| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3577 |
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| Symbol | |
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| ID | 5613575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4359824 |
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| End bp | 4361041 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934530 |
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| Product | Na(+)-translocating NADH-quinone reductase subunit F |
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| Protein accession | YP_001475309 |
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| Protein GI | 157376709 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2871] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF |
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| TIGRFAM ID | [TIGR01941] NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.606717 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAATGG CAATTGGTAT CGGCATGTTT ACTCTGGTTG TGAGTATGCT GGTTATGGTG
ATTTTATTCG CCAAAAGTAA ACTGGTGTCT ACGGGTGACG TCAGTATTCG CATCAACGAC
GATGCAGAAA AAAGCATAAC AACCTCAGCT GGCGATAAGC TGTTGGGCGC GTTAGCGAAC
AAAGATATCT TTATCCCTTC GGCCTGTGGT GGCGGCGGAA CCTGTGGTCA GTGTCGCGTC
ATCGTTAAAT CCGGTGGTGG TGATATTTTA CCAACAGAGC TCGACCATAT CACCAAGAAA
GAGGCGAAAG AGGGCTGTCG TCTGGCCTGT CAGGTGGCGG TTAAAACCGA TATGGAACTC
GAAGTTGAAG ATGAGATCTT CGGCGTTAAG AAGTGGGAGT GTGAGGTCGT CTCGAACGAC
AACACTGCTA CTTTCATTAA AGAGTTGCTA CTCAAGCTTC CTGAAGGCGA AGACGTTAAG
TTTAAAGCCG GTGGGTATAT TCAGATTGAA GCGCCTGCTC ACAAGGTCAA CTACTCAGAT
TTTGATATTC CTGATGAGTA TCGTGACGAT TGGGTCAAGT ATGGTCTGTT CGACTTAGTG
TCTAAGGTCG ATGAAGATGT ACTGCGTGCT TATTCGATGG CGAACTACCC GGATGAGAAG
GGGCTGATCA TGCTGAATGT GCGTATTGCT ACGCCACCTT CAGACGAGTT GCCACCGGGC
AAGATGTCGT CGTATATCTT TAACCTCAAA GCGGGGGATA AGGTCATTAT CTCCGGACCA
TTTGGCGAGT TCTTCGTTAA AGAGACCGAT GCCGAGATGA TTTTTGTGGG TGGTGGTGCG
GGTATGGCAC CGATGCGCTC GCATATCTTC GACCAACTTA AAGGGGTTAA AACCCAGCGT
AAGATGAGCT TCTGGTATGG CGCGCGTTCG ACACGTGAAG TGTTCTACCA GGAAGATTTC
GATTCGTTGG CTGCCGAGAA TGACAACTTT GTCTGGCACG TTGCCCTGTC CGATCCTCTG
CCTGAGGACA AGTGGGAAGG GTATACAGGT TTCATTCATA ATGTCCTGTA TGAGAACTAC
CTCAAGAGTC ATAAGGCGCC GGAAGATTGT GAATTCTACA TGTGTGGCCC TCCAATCATG
AACTCCTCTG TCATCAGCAT GCTCGAGAGC CTGGGTGTGG AAGAGGAAAA CATCTTACTG
GATGACTTTG GCGACTAG
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| Protein sequence | MEMAIGIGMF TLVVSMLVMV ILFAKSKLVS TGDVSIRIND DAEKSITTSA GDKLLGALAN
KDIFIPSACG GGGTCGQCRV IVKSGGGDIL PTELDHITKK EAKEGCRLAC QVAVKTDMEL
EVEDEIFGVK KWECEVVSND NTATFIKELL LKLPEGEDVK FKAGGYIQIE APAHKVNYSD
FDIPDEYRDD WVKYGLFDLV SKVDEDVLRA YSMANYPDEK GLIMLNVRIA TPPSDELPPG
KMSSYIFNLK AGDKVIISGP FGEFFVKETD AEMIFVGGGA GMAPMRSHIF DQLKGVKTQR
KMSFWYGARS TREVFYQEDF DSLAAENDNF VWHVALSDPL PEDKWEGYTG FIHNVLYENY
LKSHKAPEDC EFYMCGPPIM NSSVISMLES LGVEEENILL DDFGD
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