| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3566 |
|---|
| Symbol | |
|---|
| ID | 5611555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4345961 |
|---|
| End bp | 4346959 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640934519 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001475298 |
|---|
| Protein GI | 157376698 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAGA AGGTGAACCG TCTGGATTAT TTCACTTTGA TGGTGTTAGC CGGCTTAGTC
GAGTTGAAAA ATGGCTCCGC CGTCGCCGAT AGATTACATA CGACTCAATC TAAAGTGAGC
AGGGCACTGA ACTGTTTACG TGAAGTGTTG GATGATGAGC TTTTTATTCG TCAAAAGTAT
GGGTTTGAGC CTAACTCTGT TGCACTGCGT ATCTACCCCA TGGCTCAAAC TATTCTTGAA
CAATACGATA AGATGATATC GGCGACACGT AATACTGTAG TGGCACCCTA TGAGTTGACG
GTGGCCGCCC ATGAACAGTG GTCGATGATG GTGTTTAACT GTGTGACTCA CCAATGTTGC
TGTGTGGAGG GGGGGGTCAA TGTGAATGTG CAACCCTGGT CAGAAAACGT GAGCGAGCGT
CTGTGTCAGG GGAAAATTGA CTGCAGTATA TCCATCGAAC CCATCAGGCA TGAGATGGTT
GATGATGTGA ATATCGGCGA TATTACCCAT TTTTTTCTGG TCGCCAGAGT CGGTCACCCT
ATTCTGACCT CAGCCGATCC TCTGACCGAT ATCTTTGATT ATAAAATTGG TCTGGTAAAT
TCAAACCTTC AGAACAACCG CCTGCATAGA ATCGAAGAGT ATGCCCATGA GCAGGGGATA
AAACTTCGGG TTGCACTTAA GAGCCCGAGT CTGCGCATGG TCGTCGATCA TGCCAGTAAA
TCTGACGATA TCTGTGTGTT GAGTTCCGCC ATGGCCTATG AGTATTTCGA AGGCAGAGAA
GATGTCGATT TTGTCGATGT ATCGTCGCAA TGGCGAGACG CTATAGAGCA ACAGCCCGAG
AGTTATTTCC TGCACTGTCA TCGCTCGGTG ACCCCTTTGC TGGCACAATG TATGGCGAGG
TTACTGACCG AAAAGTTAGT CGATATTCAA CATCACTATG AGAGCTCACA GGGACTGCCC
CCTACGATAG CTAAACCAGG TTTAAGTGTG CTCTTTTGA
|
|---|
| Protein sequence | MLKKVNRLDY FTLMVLAGLV ELKNGSAVAD RLHTTQSKVS RALNCLREVL DDELFIRQKY
GFEPNSVALR IYPMAQTILE QYDKMISATR NTVVAPYELT VAAHEQWSMM VFNCVTHQCC
CVEGGVNVNV QPWSENVSER LCQGKIDCSI SIEPIRHEMV DDVNIGDITH FFLVARVGHP
ILTSADPLTD IFDYKIGLVN SNLQNNRLHR IEEYAHEQGI KLRVALKSPS LRMVVDHASK
SDDICVLSSA MAYEYFEGRE DVDFVDVSSQ WRDAIEQQPE SYFLHCHRSV TPLLAQCMAR
LLTEKLVDIQ HHYESSQGLP PTIAKPGLSV LF
|
|---|
| |