| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3555 |
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| Symbol | |
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| ID | 5611823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4332806 |
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| End bp | 4335115 |
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| Gene Length | 2310 bp |
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| Protein Length | 769 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640934508 |
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| Product | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase |
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| Protein accession | YP_001475287 |
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| Protein GI | 157376687 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0620] Methionine synthase II (cobalamin-independent) |
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| TIGRFAM ID | [TIGR01371] 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAACAT TGAAAGAGGT AACGATAGGG AATCTAGGGT TTCCCCGAAT TGGCCGTCAA
CGTGAGCTCA AGTTTGCTCA AGAGAAGTAT TGGCGCGGTG AGATAACCCA AGCCGAGTTG
GCCCAGGTTG CCAAAGATCT GCGAAGCACT CACTGGGAGT GGCAGGCTAA GGCTGGAGTG
GAACTCCTGC CTGTGGGCGA CTTTGCCTAT TATGATCAGG TGCTTACACT CAGTGCGACA
CTTAACGCTA TCCCTGAGCG TCACCGCGGT GAAGAGCAGG CCGATAGGGT CGACTTAGAT
ACTCTATTTC GTGTAGCCCG TGGTCGCGCA CCAACGGGAG GCGATGCACC CGCCGCCGAG
ATGACCAAAT ACTTCAATAC TAATTATCAC TATATCGTCC CGGAACTGGA AGCAGATCAA
AGCTTCACTG TCGCCTATGA ACAGATATTC GATGAGGTCA GCGAGGCTCA GGCGCTGGGT
TATAGGGCAA AGCCAGTGCT TCTCGGTCCG GTCTCTTACC TTTACCTGGC TAAGGCGGTG
GGAGGTGAGT TCGATAAGTT AACCCTGTTA CCCGCTCTGC TTAAGGCGTA CAAAGCTATC
TTAGAGCGTT TCGCAGCTCA AGGCGTCGAA TGGATTCAGC TGGAGGAGCC CACTTTAGCC
CTCGAACTCG ACAGCGATTG GCAAGAGGCT ATTGTTTCTG CCTATGAAGC GTTGCAACAC
GTCGATATCA AAGTATTACT CGCCACTTAC TACGGCACTA TTGCCCACCA TCAGGCACTC
GTATCGGCAC TGCCGGTGGC GGGTCTTCAT CTCGATCTGG TGACTGCGCC CGAGCAACTC
GCCGGATTTG CCGCTAACCT TCAACGCGAG CAGGTCTTAT CATTGGGGGT GATCAATGGC
CGAAACGTTT GGGCGGCAGA TATCGACTCG ATTGCCGACC GCATCGCTCC TGTGGTGAAC
GATCTTAAGG GACGGGTATG GATAGCGCCC TCCTGCTCAC TGCTGCATAC CCCGGTGGAT
CTGGATGTCG AGGCGGAGTT AGCCCCGGCG CTGAAGCAGC AGCTCTCTTT CGCTAAACAG
AAACTGTCTG AGCTGGCTCA GTTAAAAAGA TTACTCACCA CGCCCGAAAA GAGTGGCGAC
AGAGTCGAAA TCGATCTGAT TAAGGATACG TGTGTTTCGC GTCGAAACGC CCGGGCAGAA
GCTGCAGACA GACAAGTGAA CAGCAGAGTT GCAGCGCTGA GCCGTGATGA TTATGAGCGC
GATACTGTGT TTGCCGGCAG GCAGACCCTG CAGCAGCAAA AGTATCGATT GCCGTTGCTA
CCGACTACGA CCATTGGGTC GTTTCCGCAA ACTCCGGCGA TCCGTGGGCT ACGTAGTCGC
TGGCGAAAAG GTGAGATCAC CGAAACGTTT TATACCGACC AGCTGCGTCA GGTGACCAAA
GATACGGTCG AGCGTCAACT AAAGCTGGGC ATCGATGTGC TGGTGCACGG CGAGGCCGAG
CGTAACGATA TGGTCGAGTA CTTTGGTGAA CAGCTGCAAG GCGTAGGCTT TACTCAGTTT
GGCTGGGTGC AGAGTTATGG CTCTCGCTGT GTTAAGCCGC CGCTTATCTA TGGTGATGTA
TCGCGCCCTA AGCCTATGAC CGTCGACTGG GCAGCATACG CACAGAGTCT GACCGATAAG
CCGGTGAAGG GGATGCTGAC CGGCCCCGTA ACCATCTTGC ACTGGTCCTT TGCCCGCGAA
GATATCAGCC GTGAGCAGAT AGCGACCCAG ATCGGCTTGG CTATTCGGGA TGAGGTGGTC
GATCTTCAAA ATGCAGGGAT CGGTATCATT CAGATCGATG AGCCGGCGTT CCGCGAAGGG
CTACCGCTGA AGAGGAGCGG TTGGGATACC TACCTTAAGT GGGCGGTGGA TGCTTTTAAA
CTCAGCGCCG CAGGCGTGGA TGATGAGACT CAGATCCACA CGCACATGTG TTATAGCGAG
TTTAATGAAA CGATCAAAGC TATCGCCGCC ATGGACGCGG ATGTGATAAC GATTGAGACC
TCGCGATCAC GCATGGAGCT GCTCACCGCC TTCGAGGATT TCGAATATCC CAATGAAATT
GGCCCGGGAG TCTACGATAT CCATACGCCG AACACGCCGA CGGTAGATGA GATGGTGACA
CTCATCGAGA AGGCGGCCCA TAAGATCCCG CTTCGCCAGC TGTGGGTTAA CCCCGATTGC
GGCCTCAAGA CCCGCACCTG GGATGAAGTG GAGCCGGCAC TTCAGAACCT GGTGCAGGCA
ACGAAAGTTC TGAGACGTAG GCTGGGGTAA
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| Protein sequence | MQTLKEVTIG NLGFPRIGRQ RELKFAQEKY WRGEITQAEL AQVAKDLRST HWEWQAKAGV
ELLPVGDFAY YDQVLTLSAT LNAIPERHRG EEQADRVDLD TLFRVARGRA PTGGDAPAAE
MTKYFNTNYH YIVPELEADQ SFTVAYEQIF DEVSEAQALG YRAKPVLLGP VSYLYLAKAV
GGEFDKLTLL PALLKAYKAI LERFAAQGVE WIQLEEPTLA LELDSDWQEA IVSAYEALQH
VDIKVLLATY YGTIAHHQAL VSALPVAGLH LDLVTAPEQL AGFAANLQRE QVLSLGVING
RNVWAADIDS IADRIAPVVN DLKGRVWIAP SCSLLHTPVD LDVEAELAPA LKQQLSFAKQ
KLSELAQLKR LLTTPEKSGD RVEIDLIKDT CVSRRNARAE AADRQVNSRV AALSRDDYER
DTVFAGRQTL QQQKYRLPLL PTTTIGSFPQ TPAIRGLRSR WRKGEITETF YTDQLRQVTK
DTVERQLKLG IDVLVHGEAE RNDMVEYFGE QLQGVGFTQF GWVQSYGSRC VKPPLIYGDV
SRPKPMTVDW AAYAQSLTDK PVKGMLTGPV TILHWSFARE DISREQIATQ IGLAIRDEVV
DLQNAGIGII QIDEPAFREG LPLKRSGWDT YLKWAVDAFK LSAAGVDDET QIHTHMCYSE
FNETIKAIAA MDADVITIET SRSRMELLTA FEDFEYPNEI GPGVYDIHTP NTPTVDEMVT
LIEKAAHKIP LRQLWVNPDC GLKTRTWDEV EPALQNLVQA TKVLRRRLG
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