Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3548 |
Symbol | |
ID | 5611851 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4322689 |
End bp | 4323237 |
Gene Length | 549 bp |
Protein Length | 182 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640934501 |
Product | redoxin domain-containing protein |
Protein accession | YP_001475280 |
Protein GI | 157376680 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3118] Thioredoxin domain-containing protein |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGATA ATAACAGCGC CGATAACACT GATACTGAGC TTAAGCCGAC TTTTTTCAGA CGTGTCCTGG GTTGGGGGAG GCAGCTTGCT CTGTTGATAC TGTTTTCCAT GGTGTTCAGC GCGGGTCTGG ATATGTGGCG AGGCAAAGAT ATCCCCAGAG ATGATCTTCC CAACATTTCG GGTATTAGCC TGAAAGGGGA GAGCCTGGAT ATCGCCGCGC TGAGCAGAGA CCAAGCCGTC TTGGTGTACT TCTGGGGCAC ATGGTGTCCC GTGTGTAACC TCGTTAGTCC AGCAGTGGAT GTTCTATCGA CGAGCTATTC AGTCGTCACG GTAGCGATGA ATTCGGGAGC CGATGACAAG ATGGTCAAAT ATCTCAAGCA TAAAGAGTAT GATTTTGAGG TGATTAATGA CTCGAGTAAT GACATTGCCA GAGACTGGTC GGTACAACTG ACCCCGACCA TAATGGTATT CAAGGATGGT GAACTTAAGC ATTACACCAC CGGGTTTACC AGTCTGCCTG GCATGTGGTG GCGAATGCTA TTTACATAA
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Protein sequence | MSDNNSADNT DTELKPTFFR RVLGWGRQLA LLILFSMVFS AGLDMWRGKD IPRDDLPNIS GISLKGESLD IAALSRDQAV LVYFWGTWCP VCNLVSPAVD VLSTSYSVVT VAMNSGADDK MVKYLKHKEY DFEVINDSSN DIARDWSVQL TPTIMVFKDG ELKHYTTGFT SLPGMWWRML FT
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