| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3522 |
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| Symbol | |
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| ID | 5612141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4289630 |
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| End bp | 4291540 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934475 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001475254 |
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| Protein GI | 157376654 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.890826 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAC GGTGGCTGAA CAGAGTTTAT TTTTTGCTGA TGAATCTCAG CCTCTGCTCT
GTGCTTTTTT CAACCTCTTT ATTCGCCATT GAACAAACCA GCGTCGATGA GATTTTTACC
GAGATAGAGA GCGGTATGGC GATAAAGCCT GCCGAGTTAA CCCGAAAGCT CGAGTACCTT
AAAACACATA TATCTCCCGA TGACTTTCCC CATTACCTTA GATTACAAAG TGCGCTTTGC
TGGAATCATG ATCCTACCGA TGAGAAACAG AGAGCCGAGG CAGTTAAGCT TGCCGATAAA
CACTTAGCCT CCGACAAGAT TAGCCACTTT CCTGAGATAT TCACCGATAT CAAGCTTTGT
CGTGCCTGGT TCTACCAACA TCAGGGGCGT GTAGTGCTGG CGTTAGAGGA GTATAATCAG
GTCGTAGGAG ATGCCTATCA GCTTGAGTCC ACTAAGCTTA TCGCCGATGC ACGCAGTGTA
CGTGGAGCCA TGTACTCGTT TCAGGGGAAT TTTGCCCAAG CACTGGAAGA TCTCATCACA
GCTCAACACC TATATGACAG CCTGAAACTG GAGTATTGGT CCCTCTATAA TCTTACTGAG
TTGGCAACCA GCTACCGCAG ATTTGGCGAC CCTCAGACCG CACTAAAATA TTACCAGCAG
CTGGAAACAA AATTCATTGA ACTCGGAGAT ATGAATTCGG CAACTGGAGT ATTGTCAGAG
ATGGCGATAG CGTTAGAAGA GCTGGGTGAA TATGAGCGGG CGCTGGAAAA ATACCTTAAA
GCTCACAAGT ATTGGACAGA ACAGGGAAGC GAGCGTGGTT CGAGTACGAT TGCCGTCAAT
ATATCGGGTA CATTACTCAA GTTAAACCGA ATAGATGAAG CAAAGGCTTA TCTCACTGAA
GCGGGTCACT CTGTTAAACC GAATGACGAA GCCTTCTATA GTTTTATGAA GTTGTTTGAA
GCTCAAGTCC ACCTGATGCA AGCTGACCCC GTACAAGCCT TGATTGAACT AGATGACGCT
AAAGCTGCAT TTTCTCGAGT CAAAAACACT CGTGGCATGG CGCAGCTACT GCTCTTAGAA
AGCCAATCTC ACAGCGCTCA ACAAGATTGG AAGCAAGCCT TCAGTTCCCT GGAACAGTAC
CTTGTATTAC ATAATGAACT GGATGCAAAG CTGCAATCGA ATCGTACCAC AGAGATGCGT
ACCCGCTTCA ACACCAAACG AATTGAAACT GAAAATGAAC GCTTAGTTGA ATACCAGCGA
ATTAAAGAAC ATGAATTAAA AATCGTAAAG CAGAATAAAC AGCTTGAATA TGCGGTGCTG
ATTCTGGCAT TTATTATCAT ATTTATCATC TCGTTCTTTG CCTTCAAGCA GGCTCAAAAA
TCTAAGCTGT TGGAAGTGCT CGCCATGACC GATCATCTGA CTCAGCTCCC TAATCGCAGG
CATACCTATG CCACAGGTGA AAAGCTATTT TCAGTTAAGC CTCCGTCGTT GGCGTTGATC
CTATTCGATG CCGATAACTT TAAATCTGTC AATGATAACT ACGGTCATGA CATTGGTGAT
AAAGCGCTGA TAGAACTCGC AAAAATAAGC AGTTCGCATA TGAGAAAAGC GGATCTGGTT
GGCCGGGTCG GTGGAGAAGA GTTTTTGATT ATTTTACCTG AGACCACACT CTATCAAGCC
ACCGAGATAG CACAGAGACT CGTCAACTCT ATCGCCAAAT CAGACTTGGG TGATATTGCA
GCTAACTTTG GTATGACAAT CAGCGCAGGC ATTGCCGCTC AGGAGAAGGA TAAGAGTTTC
TCAGAGCTGC TTCAACGTGC CGATAGTGCA CTGTATCAGG CAAAGTCCGA GGGAAGAAAC
TGCGCCGTCA GCAATACAAG CCTATCAGAT GCAGAGACTG ACAAGGCCTA A
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| Protein sequence | MKKRWLNRVY FLLMNLSLCS VLFSTSLFAI EQTSVDEIFT EIESGMAIKP AELTRKLEYL
KTHISPDDFP HYLRLQSALC WNHDPTDEKQ RAEAVKLADK HLASDKISHF PEIFTDIKLC
RAWFYQHQGR VVLALEEYNQ VVGDAYQLES TKLIADARSV RGAMYSFQGN FAQALEDLIT
AQHLYDSLKL EYWSLYNLTE LATSYRRFGD PQTALKYYQQ LETKFIELGD MNSATGVLSE
MAIALEELGE YERALEKYLK AHKYWTEQGS ERGSSTIAVN ISGTLLKLNR IDEAKAYLTE
AGHSVKPNDE AFYSFMKLFE AQVHLMQADP VQALIELDDA KAAFSRVKNT RGMAQLLLLE
SQSHSAQQDW KQAFSSLEQY LVLHNELDAK LQSNRTTEMR TRFNTKRIET ENERLVEYQR
IKEHELKIVK QNKQLEYAVL ILAFIIIFII SFFAFKQAQK SKLLEVLAMT DHLTQLPNRR
HTYATGEKLF SVKPPSLALI LFDADNFKSV NDNYGHDIGD KALIELAKIS SSHMRKADLV
GRVGGEEFLI ILPETTLYQA TEIAQRLVNS IAKSDLGDIA ANFGMTISAG IAAQEKDKSF
SELLQRADSA LYQAKSEGRN CAVSNTSLSD AETDKA
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