| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3516 |
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| Symbol | |
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| ID | 5612239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4282799 |
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| End bp | 4284196 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934469 |
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| Product | beta-lactamase |
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| Protein accession | YP_001475248 |
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| Protein GI | 157376648 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTAA GGATTGGCTT AATTACTTTG AGGCGGAGCG TAATACTGCT CGGTTTGTTA
ACCGCTCCGG CCCATGCCGA TTTTCCACCG CCCGGGGATA GCTCATCCCC TGAAAACTCC
CAGAGCGAAC AAGCCGGGTC ACAAAAACTC GAGCAGAACC TTCCGCTCGA AAATCGAGTC
AGGGAGGCTA TCGATAACTC CCTGCAACCC TTTAGCGGCA GCATCCTCTT GACGGAGGGG
GGAAACCCCT TACTTAGCAT GCATAAAGGT AGGGGGATCA ATGGACGATC CAGTTTTGTT
ATTGCCTCCC TCTCTAAACA GATCACCGCC ACCTTAATAC TGCAAGCCGT CGATGCCGGA
AAACTACAGC TTGACCGCTC TCTCAACAGC TATAGATTCC AGAATGAAAC GCTGGTAGAT
AGTGAACAGG ACTGGGATCA AGAGAAGGAA AGTGAGCCAT CCACGGGTTT TAATGCAAAG
TTTGAGACTC GGCCCGAAAC TGAGCCAGAG TCAGAGTCAG AGTCAGAAAC TGAAGAGGGA
AAAATATCCC AAGTCGATGA AGATGGGTCA GCGGACAGCA CCACTGTGAC TCCCCAGAAC
CAGGCTAAAA CGACTAACCC AGAGCTCCTC TATGGCACCT CCAGGCAAAC ATCCCAAGAG
CAACCGAGGT TCAACCCTAA CCGGTTTGAT GAGAGGATCA CCCTTCATCA CCTACTGAGC
CACACATCGG GTATCGATCA ACTGGGCAAA CCAAATCGTT TCGAACCCGG CTCAAAATTT
CAATATTCAA ACTATGGCTA CACCATTCTG GGAGAACTCC TTGAGCAGGT AAACCAACAA
ACTCTTCCCC AACAGATAGC CGATTTTAAA CTGGCATATA GATTAGGCGG ACTCTATGCA
GAAGTGGGTG ATATCGATGA TATACGCCAA CGTGCCCCCG CCCTCGCCAT CGGTTTAACT
GAAACGGCAA ACGGGTTAAC CCAATCGGAC CTGACAATCA CCGCGTCTTT AATTCCGGCT
GGCGGGATAA TCTCAACCAC CAAAGCCTTC TCAGACTTTC AGATAAAACT GCATGCGGGT
AAATTTATCA GCCCGAAAAG CTATCAGTTA ATGACGACAC CTCACACCGA GATAGACTTC
CTCTGGTCAG ATATGAGCTA CGGATACGGC TTACGCTTAA ACTTTGATGA TAACCTCACA
GAATATAGCC ATACCGGCTA CCTGTCCGGC TATATGTCTA TGACACTCTA CTATCCGCAA
TTTAATTTAG GTTTAGTGAT GTTAGAAAAC ATCTCACTGA ACCTAAACTC TCTCGACAGG
GTATTTGAGC TGCATAACCA GGTTCGGGCT ATCATCAGAA ACAGGTTAAT ATCGGCTCAG
ATTCAAGATG TTAAATAA
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| Protein sequence | MKLRIGLITL RRSVILLGLL TAPAHADFPP PGDSSSPENS QSEQAGSQKL EQNLPLENRV
REAIDNSLQP FSGSILLTEG GNPLLSMHKG RGINGRSSFV IASLSKQITA TLILQAVDAG
KLQLDRSLNS YRFQNETLVD SEQDWDQEKE SEPSTGFNAK FETRPETEPE SESESETEEG
KISQVDEDGS ADSTTVTPQN QAKTTNPELL YGTSRQTSQE QPRFNPNRFD ERITLHHLLS
HTSGIDQLGK PNRFEPGSKF QYSNYGYTIL GELLEQVNQQ TLPQQIADFK LAYRLGGLYA
EVGDIDDIRQ RAPALAIGLT ETANGLTQSD LTITASLIPA GGIISTTKAF SDFQIKLHAG
KFISPKSYQL MTTPHTEIDF LWSDMSYGYG LRLNFDDNLT EYSHTGYLSG YMSMTLYYPQ
FNLGLVMLEN ISLNLNSLDR VFELHNQVRA IIRNRLISAQ IQDVK
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