| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3501 |
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| Symbol | |
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| ID | 5609977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4266840 |
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| End bp | 4268420 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640934454 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001475233 |
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| Protein GI | 157376633 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.493056 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.115232 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTAA ATCACTTTTT GAATTTGCTT GGCCTAGTGA TCTTGCTGTT CTCATTTTTG
GCGGCGAGTG TGCTTTATCA CTTTGTATAC TTGCCCGGTA TTGAATCGCA GATACGCTCA
CAGCAAGAAA AAGAACTCCT TGCCGTTCAG CGTGGCATTA AGTTTGCTCA AAAGAGTTTA
GAAACACTTT GTTATGATTA TGCCGTCTGG GATGAGATGG TTAAATTTGT CTATTCCAAA
GAACCCGCCT TCATAGCATC GAACTTAAGC GTGAACAGTT TTGAAGCTGC CGATATCGAT
GGTGCGTACC TATTCGATAC CCAAGGTAAG CTTCTGTGGC AGCACTTCGT AAATCCTGAC
TTTTCATCGC AGCGCTTACA AAAAGATAAC ACAACCTGGA TTGGACAAGT GTTACCTGAT
GAGAACATCA TTACAAAGCA GCTCCCCTCG ACAAGAAACG GAATAATTAA TTTAGACGGT
ACTGTGGTCT ATTTCAGTAA TGCCGTTGTG TTACCAACCA GTGCTATGGG AGAGATCGTC
GGTAGCCTGC TGATGGTGAG GGAGATTGAT AATGGTCTGG TTGATCAGAT CAGACAGTTG
AGCCTGGTTA ATTTTAATAT AGAGGGGTTA GACCCTGAAA AATCATATTC AGGGCTGACC
AACTTCAATA GTATGCCTCA TATTGGATCA CTGGCCTCTA AGCATGAATG GTTGATAAAT
GATGTCTTTG GCGTGCCGAC ATTGAAGATA TCGGTCGTCC ATGATGAAAA AATCTCGCCC
TCGATCCTTA CACCTCAGTC TATCCTACTC TTTATTACCT TGATTATTGC GTCAGCATGT
TCTGTTATTC CTGTGTCGGT CATGATTTTA AGGCCAATAC GCAGTGCCAG CTTAGTCTTA
GATAGAATGG CTGAGCGTGG AGTCTTGTAC AAGATGAGGA CCACATGGCA CATCGATGAA
ATAGTCCGTT TAACCAGTTC CTTCAACCTG ATGGTTGATA AATTAGAGCG GCATCAAAAT
TATCTCGAGT CTCTTTCCTA TAAAGATCCC TTAACGGGGA TCGCCAATCG GCGCAGCCTG
GAGGTTTTCG CGCAACGAGC CTTCACGCAG TGGAAAGAGG GGAAAGGTGT TATCGGTTTC
TTGATGATAG ATATCGATCT GTTTAAGGAG TACAACGACA CCTTAGGGCA TCAGGCCGGA
GACAAGGCTA TTCTCTCTAT CGCTCAAACT TTATTGCTTG AATGCAGGCG AAGGGGGGAG
TTAGTCACAC GTTATGGCGG GGAGGAGTTT TGTGTCGTCA TTCAGGGGGA TAACTTTGCT
CAAATGGAGT TGTTATCGAA AAGGATGCTG GAAAAAGTGA GAGAGCTAAA TATCTATCAC
CCTAAATCTT GTTTCGATGG CAGGGTCACC GTGAGCATAG GCGGAGTGTT CTATGAACGT
TTTCATCCAT CATTTTCTGA TGTTAGCTGG GAAGGTATGA TCGCCCAAGC TGATGAGCAA
CTTTATAAGG CAAAGTTATC GGGGCGTAAT AAACTGATGC TTGAGTACAA GAGAGTGGAG
CCGCTAAAGC TTGTGGAATA A
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| Protein sequence | MKLNHFLNLL GLVILLFSFL AASVLYHFVY LPGIESQIRS QQEKELLAVQ RGIKFAQKSL
ETLCYDYAVW DEMVKFVYSK EPAFIASNLS VNSFEAADID GAYLFDTQGK LLWQHFVNPD
FSSQRLQKDN TTWIGQVLPD ENIITKQLPS TRNGIINLDG TVVYFSNAVV LPTSAMGEIV
GSLLMVREID NGLVDQIRQL SLVNFNIEGL DPEKSYSGLT NFNSMPHIGS LASKHEWLIN
DVFGVPTLKI SVVHDEKISP SILTPQSILL FITLIIASAC SVIPVSVMIL RPIRSASLVL
DRMAERGVLY KMRTTWHIDE IVRLTSSFNL MVDKLERHQN YLESLSYKDP LTGIANRRSL
EVFAQRAFTQ WKEGKGVIGF LMIDIDLFKE YNDTLGHQAG DKAILSIAQT LLLECRRRGE
LVTRYGGEEF CVVIQGDNFA QMELLSKRML EKVRELNIYH PKSCFDGRVT VSIGGVFYER
FHPSFSDVSW EGMIAQADEQ LYKAKLSGRN KLMLEYKRVE PLKLVE
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