| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3465 |
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| Symbol | |
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| ID | 5613531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4215776 |
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| End bp | 4217083 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934405 |
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| Product | DNA-binding winged-HTH domain-containing protein |
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| Protein accession | YP_001475197 |
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| Protein GI | 157376597 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.817886 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGAAGT TATCTAAATA TCTTTCGATT GATCTGGAGT CAAGAGAGTT GCTCGATGAG
AGTAATCACT CCCGCAGTCC ATTGTCTCTG GCCGAACTGG AGATCATCAA GTTGTTGGCC
CAGCGCATTG GTGACGTTGT CAGTAAGGAA GAGCTTAATG AAGCCGGCTG GCCCGGACGT
TTGGTCGCGC CCTCATCGCT GACACAGTGC ATCAGTACCT TGCGACGTAA ATTAGAGTCC
CAAAATGATA TAGAGCTTAA AAACATTCCC AGATATGGCT ATAGCCTGTG CGTGATTGAA
AGTGATGAAT TGGTCTTGCC AAAGTCCGTA CCACAATCTG AGGGGGGCAA TGCTTCGCCT
GCAGTTAACC ACTTGAGCCG TTATTGGCGT TGGCTCGCAG TCGTGCTGTT TTTTGTGTTC
CTCGCTGGTC TACATTTCTC CGGTAAGTTA AAACAAACGG TAAATTATCT GGCTCTGCTC
GCTCAACCCG GGGTGGCGTC AATCTTGAAT GCAGAGACAG AGCTTGCCGG GCAAAAAGTA
AAACTGAGTC AACTCAGGTT AGAGGATCAG CCTGATGAAC ATCGCAGTGC GTCTCACTTT
ATCGGCAGCT GGTCCAACAC TGATAAAGTG TTTGGCAATG AATTGCTAAC GCGAATTTTT
GCCAACGACA ACAATCGTTA TGAGTCGGTC GCGCTCTGTA ATCAGTACGA AGGGGAGTGT
AAAGATACCC AGCCCCTGAA CCTGGTCAGA GATAGAAATA CCTATTCCCC ATTAGATCTG
CAGTGGCTCA GTGACACTAA GCTGCGTATG GAGCAGGTGA CCTATAACAA AATTTTGCTG
GATAAGTTTG AGAACCCGTC TCAGGGGTTG GTAGAAGATA TATATCGGGC CGATGTCTAT
TATTATGGTG CCAGTAAGAA TGTGGTTCGA GCAGATGTTC GTCTGTCTTT GGTGTACCAA
TCTCCGGCCC GTGGGACTTT GGTAATGGCG GCCTGTATCA CAGACGATCT GCTGCGACAT
GTGTCTATGC GCTATCAGTT CAGCGGTGAG TTTAAGATGC AGCAAAAGAC AGTCGATGGT
CAGCTGGTGA AGTCATTTCT GCTCGATACT GAGAATGTCA GTTTTACAAG CCCGGATGCA
ATATCCGAAG AGTCGGCGAC CATCTACCGT GAGATACGTA AATCGGTGCT AAGCAATGAA
ACTCAGATCC TGAGGCAGAT TTATCAGGAT GCCAATAGCG GGGTATGGAT GCTGCCGCTT
TGGGGCGATA CTATGGTATG GGCCCATAGG GTAGAAGTGA CGCTATAG
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| Protein sequence | MVKLSKYLSI DLESRELLDE SNHSRSPLSL AELEIIKLLA QRIGDVVSKE ELNEAGWPGR
LVAPSSLTQC ISTLRRKLES QNDIELKNIP RYGYSLCVIE SDELVLPKSV PQSEGGNASP
AVNHLSRYWR WLAVVLFFVF LAGLHFSGKL KQTVNYLALL AQPGVASILN AETELAGQKV
KLSQLRLEDQ PDEHRSASHF IGSWSNTDKV FGNELLTRIF ANDNNRYESV ALCNQYEGEC
KDTQPLNLVR DRNTYSPLDL QWLSDTKLRM EQVTYNKILL DKFENPSQGL VEDIYRADVY
YYGASKNVVR ADVRLSLVYQ SPARGTLVMA ACITDDLLRH VSMRYQFSGE FKMQQKTVDG
QLVKSFLLDT ENVSFTSPDA ISEESATIYR EIRKSVLSNE TQILRQIYQD ANSGVWMLPL
WGDTMVWAHR VEVTL
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