| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3461 |
|---|
| Symbol | |
|---|
| ID | 5613622 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4212699 |
|---|
| End bp | 4213355 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640934401 |
|---|
| Product | outer membrane lipoprotein LolB |
|---|
| Protein accession | YP_001475193 |
|---|
| Protein GI | 157376593 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3017] Outer membrane lipoprotein involved in outer membrane biogenesis |
|---|
| TIGRFAM ID | [TIGR00548] outer membrane lipoprotein LolB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0667609 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.949201 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATT TGAGCTACCT CACAAAAATA CCACTCATCT GGGTGCTGTT AAGCGTAACT
TTGCTTTCAG CCTGCTCCGT AGCGCCACCG GAGAACTTCA TTCCGGTACA GGTCGATGAC
GTCTCAAATG CTCAGGCATG GGAGATGCAG GGAAAACTTG CAGTAAGAAC CAGCAAAGAC
AAATTCAGTA CGAATCTCTA CTGGTTTCAT ACCGATAAGA AAAATGAATT AACGCTCACC
ACTATGTTAG GCACAACAGT ACTTTCTTTA ACGACATTAG AAGGCGAAGC TCGCTTAGAG
GTTGATGGCA AGGTCTATCA AGATAAAGAT GCTCAACGGC TCCTCACCAG AGTGACGGGC
TGGTCGATTC CGGTCGATGC GCTTCCGCTA TGGATAACGG GGCGACTCAG TGATGACGAT
GAACTGCTCG TTCAAGATGA GCAACAAAGA CCGATGAAAC TAGCAACACA AAATCCACCA
CCTTGGGAAG TTGAGTTTAT AAGCTGGCAA CAACAAAGTG GTGCTGAATT ACCCCGATTA
CTACAACTAA AAAGAGAGGA CCTGCGCCTA AAAATACAGA TCAGCCACTG GCAAGCCTTG
TCAGCGGCCC ACTTATTGCC TTCGAATCAA CCAGAAGAGC GCTTAAATGA GCAATAA
|
|---|
| Protein sequence | MNNLSYLTKI PLIWVLLSVT LLSACSVAPP ENFIPVQVDD VSNAQAWEMQ GKLAVRTSKD
KFSTNLYWFH TDKKNELTLT TMLGTTVLSL TTLEGEARLE VDGKVYQDKD AQRLLTRVTG
WSIPVDALPL WITGRLSDDD ELLVQDEQQR PMKLATQNPP PWEVEFISWQ QQSGAELPRL
LQLKREDLRL KIQISHWQAL SAAHLLPSNQ PEERLNEQ
|
|---|
| |