| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3446 |
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| Symbol | |
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| ID | 5610925 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4195405 |
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| End bp | 4196892 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934386 |
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| Product | putative sodium-dependent transporter |
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| Protein accession | YP_001475178 |
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| Protein GI | 157376578 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0733] Na+-dependent transporters of the SNF family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0810962 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAGAG AGCAGTGGAA CTCACGTATA GGCTTTATTC TCGCAGCTGT TGGTTCTGCT
ATCGGGTTAG GTAATATCTG GCGATTCCCC TATATGGCCT ATGAAAATGG TGGGGGGGCC
TTCTTCATCC CTTACCTCTT TGCCATGATA TCTGCCGGTA TCCCTTTTAT GATAATGGAG
TTTAGTCTCG GACATAAACT GCGTGGAGCC GCGCCCAAAG TATTCTCCAG ATTAGGCATA
CATTATGGAC TCAGGCTGGA GTGGCTCGGC TGGTTTCAGG TTCTCATCGC TGCAGTCATA
GCTGTGTATT ACGTGGCCAT TATCGGCTGG ACTATCTCCT TCTTAGGCTT CTCATTTACA
CAGAGTTGGG GAACCGACAC CAACGCTTTC TTCTTCAATG AATACCTGCA ACTTGGCGAT
AACTCCCCCA CCAGCTTAGG AGTTTTCCAA CCACATATCG CCCTGCCGAT GGCCATCGCT
TGGGCCATTA CCTCCTTAGC CATTTTTACC GGCGTGAGGG GGGGAATAGA GCGCGCGAGT
AAAATTATGA TGCCCCTACT GTTCATCATG GTATTAGTCT TGATAGGCAG AATTGTATTT
CTTCCCGGTG CGCTCGAAGG CCTCAACTAT CTTTTTCAGC CTGATTTTAG CAAAATATTG
GACACTAAGG TCTGGTCTGC AGCCTATGGG CAGATCTTCT TCACCTTAAG TGTAGGTTTC
GCCATTATGC TCGCATATTC GAGCTATCTC CCTGAAAAGT CGGATATCAA CAATAATGCG
TTCATGACAG TGCTAATCAA CTGTGGTTTC TCTATCATGG GCGGGATCAT GATATTCGGA
GTGCTTGGCT ATATGGCACA AGAGCAGGCT AAACCTTTGA CTGAGGTGGT CACATCCGGC
GTTGGGCTGG CATTTGTAAC GATCCCCGCA GCCATTAATC TACTCCCGGC ACCTTATATA
CTCGGGCCAC TATTTTTCTT CGCATTGGTG GTTGCAGGTC TGAGTTCCCA TATCTCTATC
CTTGAAGCCG TGACCTCAGC CATTATGGAT AAGCTTCACC TGCCCCGCAA AAAAGCGGCT
GCGATAGTAT GCGGTACCGG CTTTATCATC TCCATGGCGT TTGCCACCAA TGGCGGGCTG
CTACTGCTCG ACCTTATCGA CTACTTTATT AATAATATCG CCCTGCTATT CAGCTGCTTC
ATTGAACTCA TCATCCTTAC CTGGCTATTT AAAATTGCCG ATGTAAGAGA CTACACCAAT
CGACTCTCGG AATTCACCAT AGGCATATGG TTTGAGCTCT GTTTACGCTT TATCAGCCCG
GCAATGTTGG GCATCATTCT CGTTAGGAAC TTAGTCAACA CTGTCAATAA TGGTTATGGT
GATTACCCGA TAGCAGACCA GCTACTCTTA GGTTGGGGGC TCATTGCCAT CATGTTGTTT
ATCTCAATAT TGATAAACTT CGCATCCAAT CACAAGGAAG AACTATGA
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| Protein sequence | MQREQWNSRI GFILAAVGSA IGLGNIWRFP YMAYENGGGA FFIPYLFAMI SAGIPFMIME
FSLGHKLRGA APKVFSRLGI HYGLRLEWLG WFQVLIAAVI AVYYVAIIGW TISFLGFSFT
QSWGTDTNAF FFNEYLQLGD NSPTSLGVFQ PHIALPMAIA WAITSLAIFT GVRGGIERAS
KIMMPLLFIM VLVLIGRIVF LPGALEGLNY LFQPDFSKIL DTKVWSAAYG QIFFTLSVGF
AIMLAYSSYL PEKSDINNNA FMTVLINCGF SIMGGIMIFG VLGYMAQEQA KPLTEVVTSG
VGLAFVTIPA AINLLPAPYI LGPLFFFALV VAGLSSHISI LEAVTSAIMD KLHLPRKKAA
AIVCGTGFII SMAFATNGGL LLLDLIDYFI NNIALLFSCF IELIILTWLF KIADVRDYTN
RLSEFTIGIW FELCLRFISP AMLGIILVRN LVNTVNNGYG DYPIADQLLL GWGLIAIMLF
ISILINFASN HKEEL
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