| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3425 |
|---|
| Symbol | |
|---|
| ID | 5613576 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4175902 |
|---|
| End bp | 4176918 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640934365 |
|---|
| Product | ApbE family lipoprotein |
|---|
| Protein accession | YP_001475157 |
|---|
| Protein GI | 157376557 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA CCTTAGTAAA CTGGTTAGCT CTTATTGGGC TAGCCTTTTT TGTTTCAGCC
TGTACTCAAC CAGCTGAACT TGTGTCGCTC TCGGGTAATA CCATGGGCAC GACGTATCAC
ATCAAAGTTG TTCCTAATGA GCAACTGCCT GAGGTTAACC TGTTACAAGC CGAGATCGAT
CTGGCACTGG AAAAGGTCAA TGATCAGATG TCGACTTACA GGCCCGACTC CGAGTTGTCT
CGCTTTAACA ATATGGGCCA TGAAGAGACG GTGACGGTAT CGAAAGATAC GGCATTTGTT
ATCGCCGAGG GGATACATCT GTATAAGGTT ACAGGTGGTG CGCTTGATAT CACCTTGGGA
CCGCTGGTCA ATCTATGGGG CTTCGGGCCC GACAAACGTC CGACAGCATT GCCCTCTCAG
GCAGTCATTT CCGCTGCGAA AGCCAAGACC GGCATCGAAT ATCTGCACCT CGATGGTAAC
AAGCTTAGCA AGACCAATCC TGACTTGTAT GTGGATCTCT CATCGATTGC CAAGGGCTTC
GGTGTCGATG TTGTTGCATC TCTGCTCGAT AAGTATCAGG TATCGGGTTA CTTGGTCGAG
GTGGGCGGTG AGTTGAGTGT ATTTGGCCAG AAGATTGATG GCTCTCCCTG GCGCGTCGCC
ATCGAACAAC CCGATGTTGA TGATCGTGAG ATACAGCAGG TGATCGAACC GGGCGATATG
GCGGTTGCAA CATCTGGTGA TTACCGTAAT TATTATGAGG AGGAGGGACG TCAATTCTCT
CACCTTATCG ATCCTCGTGA CGGTTACCCT ATCGATCACA GATTAGCGTC GGTTACCGTC
TTACATAAAC AGTCTATGGT AGCCGATGGT TACGCTACCG CTATGATGGT GATGGGGTCG
CAGGCGTCAC TGGAGCTTGC CGAGCAAGAG AGTCTTGCGA TCATGTTGAT CGAGAAGCAG
GATGATGGCT TTAACGTTTT CTATAGTGAT GCCTTTAAGC CATTTTTAGG TAAGTAA
|
|---|
| Protein sequence | MKKTLVNWLA LIGLAFFVSA CTQPAELVSL SGNTMGTTYH IKVVPNEQLP EVNLLQAEID
LALEKVNDQM STYRPDSELS RFNNMGHEET VTVSKDTAFV IAEGIHLYKV TGGALDITLG
PLVNLWGFGP DKRPTALPSQ AVISAAKAKT GIEYLHLDGN KLSKTNPDLY VDLSSIAKGF
GVDVVASLLD KYQVSGYLVE VGGELSVFGQ KIDGSPWRVA IEQPDVDDRE IQQVIEPGDM
AVATSGDYRN YYEEEGRQFS HLIDPRDGYP IDHRLASVTV LHKQSMVADG YATAMMVMGS
QASLELAEQE SLAIMLIEKQ DDGFNVFYSD AFKPFLGK
|
|---|
| |