| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3398 |
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| Symbol | |
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| ID | 5609696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4141790 |
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| End bp | 4142089 |
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| Gene Length | 300 bp |
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| Protein Length | 99 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640934338 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475130 |
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| Protein GI | 157376530 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1534] Predicted RNA-binding protein containing KH domain, possibly ribosomal protein |
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| TIGRFAM ID | [TIGR00253] putative RNA-binding protein, YhbY family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00127683 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000205489 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGAACTTAA CAACCAAACA AAAACAGCAC TTAAAAGGCT TAGCGCACAA TTTAAAGCCA
GTAGTGATGC TTGGTTCCAA TGGTCTGACT GAAGGTGTAC TGGCGGAAAT TGATAGCGCA
CTCACTCATC ACGAGCTGAT CAAAGTGAAA GTAGCTGCTG GTGACAGAGA GCTAAAAAAT
GCAATCGTTG ATGCCATTCT TCGTGAAACT CAAGCTGTAA AAGTACAGCT TATCGGTCAC
GTGTTAGTAC TATTTCGTCA ATCTGAAGAG ATGAAAATTG CTATTCCAAA AGCAAAGTAA
|
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| Protein sequence | MNLTTKQKQH LKGLAHNLKP VVMLGSNGLT EGVLAEIDSA LTHHELIKVK VAAGDRELKN
AIVDAILRET QAVKVQLIGH VLVLFRQSEE MKIAIPKAK
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