| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3390 |
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| Symbol | nusA |
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| ID | 5610147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4132433 |
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| End bp | 4133932 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934328 |
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| Product | transcription elongation factor NusA |
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| Protein accession | YP_001475122 |
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| Protein GI | 157376522 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000181989 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00101946 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATAAAG AGATTCTGCT AGTCACTGAG GCGGTTTCAA ATGAGAAAGG TGTTCCTCGC
GAAAAGATTT TCGAAGCGCT GGAAATAGCC TTAGCTACAG CAACTAAGAA AAAGTATGAA
GGTGACATCG AAGTTCGTGT CGAGATCGAT CGTAAGACGG GTGCTTATGA AACTTTCCGT
CGTTGGATGG TTGTTGAAGA CACAGGTGAG CCTTTAGAGA ACCCTTTTAG TGAAATTACA
CTGGAAGCCG CTCAATTTGA AGAGCCTGAA ATTCAGCTTG GCGAGTATAT CGAAGACGAT
ATCGAATCAG TGGTATTCGA CCGTATTACG ACTCAAACTG CGAAACAAGT GATCGTACAG
AAAGTACGTG AAGCCGAACG AGCTCAAATA GTCGATCAGT TTAAAGACAA AGAAGGTGAG
TTAATCACCG GTGTCGTTAA GAAGAGTAAT CGCGAAAGTG TCGTGGTCGA TTTGGGCAGC
AATGCAGATG CAGTGTTGTT TAAAGAAGAT CTGATTTCTC GTGAAAGCTT CCGTCCTGGT
GACCGTGTTC GTGCATTGCT ATTTGCCGTT CGTCCTGAAG CTCGTGGCGC TCAACTGTTC
TTGACTCGTA CTAAGCCGGA TATGCTGATT GAGCTTTTCC GTGTAGAAGT GCCGGAAATT
GCCGATGAGA TGATCGAGAT CATGGGTGCC GCTCGTGATC CTGGTTCACG CGCAAAGATC
GCTGTTAAAT CCAATGACCG TCGTATCGAT CCAATCGGTG CCTGTGTTGG TATGCGTGGT
GCTCGTGTAC AGGCCGTTTC GAATGAGCTT AATGGTGAGC GTGTCGATAT CGTGCTTTGG
GACGATAACC CAGCTCAGTA TGTGATCAAT GCAATGGCTC CGGCCGATGT AGCTTCTATC
ATCGTTGATG AAGATAACCA CTCGATGGAT ATCGCCGTTG AAGCCGATAG CTTAGCGCAG
GCAATTGGCC GTAATGGTCA GAACGTTCGT TTGGCGACTC AACTTTCTGG TTGGGAACTT
AACGTGATGA CAGTTGCCGA TATGCAAGCT AAGCATCAAG CTGAAAGTGC AAAAGTTGTG
AACTTGTTCG TTACTTCTTT AGAAGTCGAT GAAGATTTCG CACAAGTGCT TGCAGATGAA
GGCTTTACCT CGCTGGAAGA GGTTGCTTAT GTGCCAGCAT CTGAGCTTAT GGACATTGAT
GGATTCGACG AAGATATCGT TGAAACCTTA AGAGAGCGCG CTAAGGCTGC GATCTCTACT
CGTGCACTCG CTTCAGAAGA AGCCCTTGAT GGTGCCGAGC CAAGTGAGGA CCTACTTGCA
CTCGAAGGTC TAGAGAGACA TCTAGCGTTT GTATTCGCGA GTAAAGGCGT TATTACACTA
GAAGATTTAG CCGAACAAGG CATTGATGAC TTGATCGACA TTGAAGAATT GACAGAAGAA
AAGGCTGGTG AGCTCATCAT GGCAGCCCGT AATATCTGTT GGTTTGGCGA CGAAGAATAA
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| Protein sequence | MNKEILLVTE AVSNEKGVPR EKIFEALEIA LATATKKKYE GDIEVRVEID RKTGAYETFR
RWMVVEDTGE PLENPFSEIT LEAAQFEEPE IQLGEYIEDD IESVVFDRIT TQTAKQVIVQ
KVREAERAQI VDQFKDKEGE LITGVVKKSN RESVVVDLGS NADAVLFKED LISRESFRPG
DRVRALLFAV RPEARGAQLF LTRTKPDMLI ELFRVEVPEI ADEMIEIMGA ARDPGSRAKI
AVKSNDRRID PIGACVGMRG ARVQAVSNEL NGERVDIVLW DDNPAQYVIN AMAPADVASI
IVDEDNHSMD IAVEADSLAQ AIGRNGQNVR LATQLSGWEL NVMTVADMQA KHQAESAKVV
NLFVTSLEVD EDFAQVLADE GFTSLEEVAY VPASELMDID GFDEDIVETL RERAKAAIST
RALASEEALD GAEPSEDLLA LEGLERHLAF VFASKGVITL EDLAEQGIDD LIDIEELTEE
KAGELIMAAR NICWFGDEE
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