| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3371 |
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| Symbol | |
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| ID | 5609591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4105700 |
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| End bp | 4108114 |
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| Gene Length | 2415 bp |
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| Protein Length | 804 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934309 |
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| Product | type IV pilus assembly PilZ |
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| Protein accession | YP_001475103 |
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| Protein GI | 157376503 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.827846 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTAG ACGAACATAG CGCCTTAATT GAGCAGCTCA AGCCCCTGTT AATGGAACCC
GATTTTCAGG AGCTATTTCA GCAGCTGACA GCAGATGAAT CGAATTCCAC CCGCTTTTTG
CTGAAGATGG AACTCAATCG AATCTCTTCG CCTTGCAGTC GTATCATAGA TCTCAGAGAC
AAGTCTGAAC TCCCCTGTGA AGAGGTGATC CACAACAATC AGCATCACTA TCTCGACAGT
CCCGCTAAAG AGAGCTTTAT GCAATCTATG GCGCTTTATC GCGATCAATA TACCTTAGGG
GTTTATGAGC AGGTCATCGA AGCACATAAG CAGCGCAAGC TAAAACTACG TAGCGGTGAA
AACAGTCAAG ACAACGGGCA ACTCACCCCC TTCATCGCAA AGGGCGTCGT CTTAGGTAAT
TACTTTAATC GCTGTGAAGA GAGGATGAAT TACAGCATTC GGATCTCGAC ACTGCAATCG
GGAAGAGCCG AGATCCCCGG GATCACCGTC GACCTATCGG TAGGTGGCGC ACGGATAAGA
CTGCCGCTGG CACATAATTT CGATCTCGAT AAACCGATAA GAGTCAAACT GCTGGAGCTG
AGCGAAGAGT ATTATTATGA AGACCTTCAA AAAGGGGTCG ATTACGAAAT AGTCGATACA
CAGACCAGCT CTGAGTATTG CTGGATGCGT CTCAAACGCG TCGGCGGCAC AGAAGAGCTG
GCAAAAATGC TGTCGAACCT GATTAAAGGT TACAAGTACC GCTATAAGGT CGATATCAAT
GACGTTTTAG TGGCTGCGAC CGGCCTGGGT TTTGAGCGTC ACTATCTGCC TCATCTTCCT
CACCTGCCGT TATTTGTCGA ATCCGATGAG GGTCAGTATA AAATCACTCA TAAGCTCCTC
AGCCGCGATA ATCAGCAGCT ACAATATTTC TTCCGGGATG AGAGGGATAT CAGTCAACTG
TCGGGTATGT TGTCTAGCCG GAGATTACAC GCACTGCTCG GTGAGCCTGA CAATAAAGAT
CACAGCCTCT TCTTCTGCTT CACCTTTCAG ACTCAAGGTT GCGTCTTTTT TTACTCGGCG
ACATTAGCCG AACTTAAAAG CAAAAAACTA TTGGCGCTGT TTCTCAGCTT TGGCGCCACC
AAAGCTTCAT GGAAAGTCTT TAAGTTAGCG CATCACAAGA TAGACCATAG CCAATGCTAC
AAAGCCAGCA TTCTCCCCGG TGATGATAGT GGCTATTCGT CACTGACCGA GGCACAACTC
AAGCGATTCA CTCATGTATT ACAACTGATA GACCTCACGG CCGAACACGC TCAGGTCGAT
TATCAGACCT GGGGTGGTAA GAGTGATAAA AAAGTCAACG AACTGAAGAT ATTTGGCCAA
CAGAAAGTCA CCGCCAACCC GATAAAACTG CTTTCACTTC AATTTAGCGA GAGAAGAAAT
GAGGCGCGCT TCGCCTTCAA AACTCAGGTA AACATAAACC AGGGCAAGCT TACGGCGACA
GGCTTCACCC ATGACATATC GAGTAAAGGG CTGCAACTGA CCCTAGAAAG TCCGGTTCAA
TTTAATAAAA CAGCACCACT ACTGTTGAGC TTCCCTAAAT TACAGCCGCT TGCCGGGAAA
ACTAAACTCA ACCATCTCGC TTATCGACTG ATAAGAACCA GAAAGAATAA CGTCACCATT
CATCTGGCTG CGGCGATGGG GCATAGCCCC CATGCGGGGG TTGAGTTTTT AAATAAACTC
ATCATCCATA ACGAAGAGAA GCTGGAAAAG GTCACTGAGG CCCACAGTGA AACCAAAGAG
TTGGCTGACG GTTTAAAAAA CCTGTTTATG CGCCATTTAG ATTCGGTGCC TTTCTTTATC
GAAAAAACGG CCAAGTCGGC ACAGCTTTCA ACTCTGGGGA TAGGCACCCA TAAAAATGTC
ATCATGGATC TCTTCGCCGC GTCAGCCTCT GAACACTTAG AGTACAACTT AGAGTCTCTA
CTTAAAGATG GGCGCTTGAA GAGAGAGTTC ATCGATCCTA TCAGAGCCAT GAAGCCCCAA
AACGGTTTAG AGTACTTTGA AGTCTATCTT CAGGTATCGA GACAATCTCA GGGCCAGGTC
AGGGTAAAGT GTCTTCCGCC AACGGAGATC GGTGATAACA ATGCCAGACA GCACTTCATC
AACCAGAGTA ATAATCTGGG ACGTTTTATG GCATTGAGAG TCTATCGTGG AGCATCGGGA
AAACCGGATC TGGGCTACAT TCGTCGGGAG CTCGAATATA TCAACGCACA CGCCCCCCAT
AAATCTAAGA AATTAGAGGA GCTGTTATGG CGGATCATCG GAGTTGGCGA GCTGCTGGAT
ATTACCGAAG AGGTTCAGCT GAGATACCCC GACCTTTATG AATACCCTGA GCAGCAACTT
GAGGTTTCGG CCTGA
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| Protein sequence | MSLDEHSALI EQLKPLLMEP DFQELFQQLT ADESNSTRFL LKMELNRISS PCSRIIDLRD
KSELPCEEVI HNNQHHYLDS PAKESFMQSM ALYRDQYTLG VYEQVIEAHK QRKLKLRSGE
NSQDNGQLTP FIAKGVVLGN YFNRCEERMN YSIRISTLQS GRAEIPGITV DLSVGGARIR
LPLAHNFDLD KPIRVKLLEL SEEYYYEDLQ KGVDYEIVDT QTSSEYCWMR LKRVGGTEEL
AKMLSNLIKG YKYRYKVDIN DVLVAATGLG FERHYLPHLP HLPLFVESDE GQYKITHKLL
SRDNQQLQYF FRDERDISQL SGMLSSRRLH ALLGEPDNKD HSLFFCFTFQ TQGCVFFYSA
TLAELKSKKL LALFLSFGAT KASWKVFKLA HHKIDHSQCY KASILPGDDS GYSSLTEAQL
KRFTHVLQLI DLTAEHAQVD YQTWGGKSDK KVNELKIFGQ QKVTANPIKL LSLQFSERRN
EARFAFKTQV NINQGKLTAT GFTHDISSKG LQLTLESPVQ FNKTAPLLLS FPKLQPLAGK
TKLNHLAYRL IRTRKNNVTI HLAAAMGHSP HAGVEFLNKL IIHNEEKLEK VTEAHSETKE
LADGLKNLFM RHLDSVPFFI EKTAKSAQLS TLGIGTHKNV IMDLFAASAS EHLEYNLESL
LKDGRLKREF IDPIRAMKPQ NGLEYFEVYL QVSRQSQGQV RVKCLPPTEI GDNNARQHFI
NQSNNLGRFM ALRVYRGASG KPDLGYIRRE LEYINAHAPH KSKKLEELLW RIIGVGELLD
ITEEVQLRYP DLYEYPEQQL EVSA
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