| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3348 |
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| Symbol | |
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| ID | 5610391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4072297 |
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| End bp | 4074063 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934286 |
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| Product | formyl transferase-like protein |
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| Protein accession | YP_001475080 |
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| Protein GI | 157376480 |
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| COG category | [I] Lipid transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0223] Methionyl-tRNA formyltransferase
[COG1024] Enoyl-CoA hydratase/carnithine racemase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAATCT TGTTATTGGT AACGGCATTT AATGGATTAA CTCAGCGTGT ATTTGAGCAG
CTCAGGCTTC AGAGTCATGA AGTGAGAGTG ATATTTGCCG GCTGTGATGA TGAGGTTCGT
GACACTGTCA GCGTATTTCG TCCGGATATC ATTCTCTGCC CGTTTCTAAA ACAGCGGATC
CCAGAGGATA TCTGGAATAA ACATCTTTGC ATCATCATTC ACCCGGGGAT CTCCGGCGAT
CGTGGCCCAT CATCGCTGGA CTGGGCCATC TTAAATCGTG AAAGTGAGTG GGGGGTGACC
GCATTACAAG CCGATAGCGA AATGGACGCC GGAGATATCT GGTCGACGGG GAACTTCCCT
ATGCGAGCGG CTTCCAAAGC GAGCCTCTAC CGTCAGGAAG TGACTGAGAT GGCCGCTCAT
CTGGTTGATG AGATAATCGA GCTGTTTAAG CTACGAACGG ATGCTCTCCA ATCAAACCCG
TTAAGTTCGA GGTTTAAGCC CCAAGCCTTA GATTATTCCC GAGCCGATGT AAAAGGAGAG
CTGCGACCAC TGCTCAAGCA GCCTCAGCGA GCGATCGATT GGTCCAGAGA CAGCACTCAA
ACCGTTCTGG ATAAAATTCG CGCCGCAGAT AGCTTTCCCG GCGTATTGGA TGAATTTTGT
GGCCTGCCGG TTTATCTCTA TGGTGCTCAT AATGAAGGGG CGCTGAAAGG GGATAAACCT
AAACAGATCT TAGGACAGCG CCATGGTGCT ATCTGCGTTG CGACAATCGA CGGGGCTGTG
TGGATCAGCC ATTTGAAACG ACAAAAGAGA GAGTCTCAAT CCTTTATTAA ATTACCCGCA
ACTTGGGTAT TGGGTGAGGC TGTCGACACT GTTCCTGAGT TAAGTCTGAA GGTTTTACCC
GATAACAATA CAGATACGTT CTCAGAGATA ACTTATAGTG AGTCGGGAAG TGTCGGCTAT
CTGTATTTTA ATTTTCACAA TGGTGCCATG GGTACCGAGC AATGTTATCG CCTGCTCAAG
GCCTATAAAG CGGCACTCGT ACGGGATACC CGGGTCTTAG TGCTTATGGG AGGGGATGAC
TTCTTCTCTA ATGGTATTCA TCTCAATCAT ATTGAGGCGT CAGAAGATAA AGCCGAATCA
TCCTGGTTAA ATATCAATGC TATAGATGAT CTCATTGAAG CCATACTGGA AACACGCAAC
AAGATCACCG TCGCAGCGGT TCGAAATAAT GCCGGTGCCG GTGGCGCGAT GATGGCCTTA
GCCTGTGATT ATATTTTTGC CCGCGACGGT GTCGTGCTTA ACCCGCACTA CAAAGGGATG
GGGTTATATG GCTCCGAGTA TTGGACCTAT ACACTTCCTA ATAGAGTCGG CATGGAGAAG
GCGGCAGAGT TGACCGAATC TTGCTTACCT TTAGGAGCTC AAGCCGCTGC CAATATCGGT
TTTCTCGATG CAATTTTCCC AGGTGATTTC ACCGCCTACC AGTTTGAGCT CAACAAGCAT
GTCACCGATA TTGCTGCCGA TTATCAATTT GAGCAACTGC TGGCAAATAA GCTCCAAAGG
CGGGACAGGG ATGAGGCAGA GAAGCCGCTG GCGGCATACC GTCAAGAGGA GTTACTTCAG
ATGGAGCTGT GCTTCTGGGG AGAAGGCTCA CAATACCACG CCAAGCGCTA TAATTTTGTC
TATAAAGTCA GTTGTGGAAA GACGCCTGCC CACCTTAAAT ATGACAGCAA CAAACCGGAA
ATAAAGACAA GTTCAGTATC CGTTTAA
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| Protein sequence | MRILLLVTAF NGLTQRVFEQ LRLQSHEVRV IFAGCDDEVR DTVSVFRPDI ILCPFLKQRI
PEDIWNKHLC IIIHPGISGD RGPSSLDWAI LNRESEWGVT ALQADSEMDA GDIWSTGNFP
MRAASKASLY RQEVTEMAAH LVDEIIELFK LRTDALQSNP LSSRFKPQAL DYSRADVKGE
LRPLLKQPQR AIDWSRDSTQ TVLDKIRAAD SFPGVLDEFC GLPVYLYGAH NEGALKGDKP
KQILGQRHGA ICVATIDGAV WISHLKRQKR ESQSFIKLPA TWVLGEAVDT VPELSLKVLP
DNNTDTFSEI TYSESGSVGY LYFNFHNGAM GTEQCYRLLK AYKAALVRDT RVLVLMGGDD
FFSNGIHLNH IEASEDKAES SWLNINAIDD LIEAILETRN KITVAAVRNN AGAGGAMMAL
ACDYIFARDG VVLNPHYKGM GLYGSEYWTY TLPNRVGMEK AAELTESCLP LGAQAAANIG
FLDAIFPGDF TAYQFELNKH VTDIAADYQF EQLLANKLQR RDRDEAEKPL AAYRQEELLQ
MELCFWGEGS QYHAKRYNFV YKVSCGKTPA HLKYDSNKPE IKTSSVSV
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