| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3308 |
|---|
| Symbol | |
|---|
| ID | 5610839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4021615 |
|---|
| End bp | 4023771 |
|---|
| Gene Length | 2157 bp |
|---|
| Protein Length | 718 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640934246 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001475040 |
|---|
| Protein GI | 157376440 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.128236 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000709516 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACCA TTCTTATTGC AATCACTCTC TTTCTATTCA GTAGCTTAGC CTATGCTCAA
GATCATAAGG CCATTGAGAT AAAGTTCAGA GAGGCACCGA TCCAGCTCTT TGAAGAGGTT
ATCGCATCGG TATCCTTACC TATCCAGGCC AATACCAGTG CCGAATTTAG CAAAGTTTCG
AGTGAGCAAG GCTATACCGT TGATGAGTTA AAACAGAAGA TGCAGTTACT GGCGCGCCTG
TATCTGGACA CCAGCATCAA AGAAAAGAAT AAATACACAA AAGCAGAATC CCTGCTCAAA
CTACTCGAAG TCATAGGCAC CACAACCTAT GACCAAGCTT ACCTTCAGAT GTTAACAGGG
CGCTACATAG CCAGAAGCAC TCGCGATTAC AAGAAGGCAA TACCACATTA CGAACAATCG
ATTAACACCA TATTACCCGA ACAAGAGATC AAATCTCAGC TGCTGAAACT ACTCGCCTAT
GACAATCTGG GCGACTTAAA CAGAATCATA CGACAGGATA AGCCGGCATT GGTTTATCTT
AATCAATACC GGGAGATGGC CTATCAACTC AGGGACGATT ATTTTATTGC CCAAGCCGAG
GCCTCTCTTG GAAGCTATTA CAACAAGCGT GACCAACTCA CGGACGCGGT ACAACATTAC
AGCGAGGCCT TGAGACTCTC GAATAGACAA AATAGGCCTT TTTTAAAAGC CGACCTTCAA
CTTAAAATCG CCCGGGTCTA TCGTGATTTA GAGCTTTGGG ATGATGCGCT TCAATATGCT
CATGAAGCCG CTCAGGCTTT CGAGAAGCTC GAAAAAAACG GCTACCGCTC TAATTGTATG
ACGGTTATCG CTATGATATA TGCGAACCAG GGAGACTGGA ATCAAGCCAT TGATTATTAC
CTGAACGCCC AACAACTCGA CTTACAAAAC CAAAACATTA CGGCTCAAGC GTTAAACTTC
CATAATCTGG GCGAAGCCTA TTTTAACAGT GGTAATAGCA CCACTGCGTT AGACTTTTTA
CTTAAATCGA ACGCACTTTT CGTGGAAAGG AAAAGTAAAC ACTATCAAGT CTATAGTGAT
CTGTTAATCG CTCAAGTTGC TGTGGCAGAT AAAAAATGGC AACTGGCAGA TAAGCACGCA
ACATCAGCAC TATCAATAGC CGAAGCCCTC TCTCTCAGAC AAGAACAGAT TGAAGCCCTC
GAATACTCCG TTAAGGCCTT AAGAGGGTTA AAGCAGTATG ACAAGGCATT TAACCTAACA
GATAAACTGA TAGCCCTGAG TCAAATGGAG CAGGAAAAGG TGGTAACCAA AGAGAGTTAT
ACACCTTCGA TCCTTGCCGA GCAGAAATTA AAACTTAAGC TAAATCAAAT CAAGACAGAA
CAGAGTCAAC TCAACAAGCA GTTGGAACGC TCTCGAATCA TCCTTATCAC TGTGATGATT
GCGGCGATAT TAATCTCCCT GTTCTCTTTT AATCAATGGC GCATGAGGGA AATATTATCT
ACCGAACTAG CCCATGCCAA TGAAATCAAT AATCTGGAGC CAATTAGCGC ACTCCCAGGC
TACAGAGGCT TCATCGAGGA GCTTAATACT CATCGAACAG AGAAACCTAA AGCCATCGCA
TTGATATCCT TGAGAAACCA GATGAATAAC GATATACATC AAGGGCTTGA GGAAAGTTCA
AATATAAATA AGATTCAAAT GGAAGCCATA TCACAGTGTT TTTCAGGTAA GGTTTTTCTG
GTTAGACCCG GATTGTTTGT AATATCGGTC AGAGAGCCTA TTCAAGCGGG ACTACTACTG
GAAAAATGCA GTAACGCAAT CGATAAGGTC CATGGAGACA CCTGCATTCA TATGGGCTAC
CTTCCGATGC CTTTGTTGAG CGATCCTCAA ATAAAACTCA CTCCGGAGAT CCACTTTGGC
GCCTCGCAGA TGACGTTAGC GGCGGCGCTC AGCCTGGGGA CAGATAAAGA CTATTTTGTT
ACATTAAAAG CCCTTAACTT TGCTCCTTCG GCCATCTTCT CTCCCCCTTT ATATCTGCAC
CTGGAAAAAG GCATTGCTCG AGGACTACTC AAGGTTGAGA CCAATGGCGA TAAGAAACTG
ATCTTGTGGC CAAAATGGGA AAGTGATCTG AAATTTCAAC ATTCAGAAAT AGATTGA
|
|---|
| Protein sequence | MRTILIAITL FLFSSLAYAQ DHKAIEIKFR EAPIQLFEEV IASVSLPIQA NTSAEFSKVS
SEQGYTVDEL KQKMQLLARL YLDTSIKEKN KYTKAESLLK LLEVIGTTTY DQAYLQMLTG
RYIARSTRDY KKAIPHYEQS INTILPEQEI KSQLLKLLAY DNLGDLNRII RQDKPALVYL
NQYREMAYQL RDDYFIAQAE ASLGSYYNKR DQLTDAVQHY SEALRLSNRQ NRPFLKADLQ
LKIARVYRDL ELWDDALQYA HEAAQAFEKL EKNGYRSNCM TVIAMIYANQ GDWNQAIDYY
LNAQQLDLQN QNITAQALNF HNLGEAYFNS GNSTTALDFL LKSNALFVER KSKHYQVYSD
LLIAQVAVAD KKWQLADKHA TSALSIAEAL SLRQEQIEAL EYSVKALRGL KQYDKAFNLT
DKLIALSQME QEKVVTKESY TPSILAEQKL KLKLNQIKTE QSQLNKQLER SRIILITVMI
AAILISLFSF NQWRMREILS TELAHANEIN NLEPISALPG YRGFIEELNT HRTEKPKAIA
LISLRNQMNN DIHQGLEESS NINKIQMEAI SQCFSGKVFL VRPGLFVISV REPIQAGLLL
EKCSNAIDKV HGDTCIHMGY LPMPLLSDPQ IKLTPEIHFG ASQMTLAAAL SLGTDKDYFV
TLKALNFAPS AIFSPPLYLH LEKGIARGLL KVETNGDKKL ILWPKWESDL KFQHSEID
|
|---|
| |