| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3296 |
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| Symbol | |
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| ID | 5612202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4005437 |
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| End bp | 4006960 |
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| Gene Length | 1524 bp |
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| Protein Length | 507 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934234 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001475028 |
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| Protein GI | 157376428 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000430363 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACGTGGA TGTCAACGCT GGAAAAAGCC GACAAGATCG GTCTAACGGG TGGGAGTTAT
TGGTTAGCCA TGCCTGTTTT GATGTATGAA GCTGAGCCTG AGTGGGTGAT CAATGTTAGA
AACTCAGTAG TGGAGTCACT GGATTACTAC GTTATCGGAG ATGATGGCAG TTATCAAAAG
GCACACAGCG GCTACGATGC ACCCTATGAA TTCCTGTTCG ATTATGGTCG CCAAGTTGAA
TTAAATTACG GCGTAGAGTA CTGGTTAATT GTTCGAATGG AGAGCCGCTA CTTCTCTTCG
GTTCCTAAAG TGGAGCTAAA TGCATACGGT GAACATAAGA GGAGTTCAGA TCTGGAGGCG
ATGGCGGTGA TCTTATGCCT CGGCGGCCTC TTGTTTATTG CTCTATATAA TTTACTAATT
TACACCTCAA TTTTAGACCG GGCCTTTCTC TATTATGGCC TATATGTATT GGTTTACTTT
GTAGGGTGGG GCTTAACTTT CCATATACCG GCTCACTTAA TGAGCTTTCA TAACTTAGAG
CTTCATCATC TGTTCTTTAT TGGTTTGCCG ATTTTTAATA TCCTATTTTA TAAGCACTTT
CTCCAGCTTC CTGAATATTC ACCTCAGTTA TGGTATTTAA GTAAAGTGTT GTTGTGGGCC
TGTGTGATTG CCTTGCCGAC AAGTATCTTT CTGGTCTCTC ATACGGCGCT CATCGCCTCT
GTGTTAATCA TGCTCTGGAT CGCGCTTGCC ATCACATGTG GCAATGTTTG TCTGCTCAAA
GGATTTTCCC CTGCACGTTA TTTTATCTTT GCCTTTACCT GCCTGTTACT GCCAGCTGTG
ATTATCTTAC CCGGTAACCT GGGACTCACT CCGGACTTTT TTGCGTACGC CGAGCTAGCC
ACCTTGGTGG GCGGCACCGC CGATGCCCTG CTTTTATCAC TGGCGCTGGC AAATAAGATA
AAGTTACTCT CCGAAGAGCG GAAAACATAC ATAGAAACAT TAGGGGAGGC CTGGGAAAAG
GTACGTCAAG ATCGGCTGAC CCAGCTACCG AATCGTCATG CGTTCGATGA GTTTATGCAG
TCTGAGACAT TACTTGGCAA AGATGCGAAG CAAACTCAGC ATCTGTTTCT ATTAGATCTC
GATGGCCTCA AGCAGGTCAA TCACCAGCTT GGGCATCAAG AGGGAGATTG TTTATTGCAG
TATGCGGCTA AACAATTGAC AGCCATCTGT GATGGGTTTG AAAACACGAG TCTGTTTCGT
ATCGGAGGCG ATAACTTTGT TATTCTGGTA TCGGTCGAGC AGACTCCCGA TATCGAAGCC
CGGTTAGCTG AACTCTCAAT AACTATCGAA AAAGAGGGCG GTAAAGATAC CGGGCTGAGC
TATGGTTATG CCTTAAATCA GGATGCGAAT GATGCCAGTG AGTGGTTGAG AACGGCAGAT
ATGAATATGT ATATTCGTAA GGCGGAGAAA CGTCGACTCA AGCACAGCCA AAGCAGAACG
ATTCCGATGG ATTCGTTGGT ATAG
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| Protein sequence | MTWMSTLEKA DKIGLTGGSY WLAMPVLMYE AEPEWVINVR NSVVESLDYY VIGDDGSYQK
AHSGYDAPYE FLFDYGRQVE LNYGVEYWLI VRMESRYFSS VPKVELNAYG EHKRSSDLEA
MAVILCLGGL LFIALYNLLI YTSILDRAFL YYGLYVLVYF VGWGLTFHIP AHLMSFHNLE
LHHLFFIGLP IFNILFYKHF LQLPEYSPQL WYLSKVLLWA CVIALPTSIF LVSHTALIAS
VLIMLWIALA ITCGNVCLLK GFSPARYFIF AFTCLLLPAV IILPGNLGLT PDFFAYAELA
TLVGGTADAL LLSLALANKI KLLSEERKTY IETLGEAWEK VRQDRLTQLP NRHAFDEFMQ
SETLLGKDAK QTQHLFLLDL DGLKQVNHQL GHQEGDCLLQ YAAKQLTAIC DGFENTSLFR
IGGDNFVILV SVEQTPDIEA RLAELSITIE KEGGKDTGLS YGYALNQDAN DASEWLRTAD
MNMYIRKAEK RRLKHSQSRT IPMDSLV
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