Gene Ssed_3278 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3278 
Symbol 
ID5612705 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3979642 
End bp3980466 
Gene Length825 bp 
Protein Length274 aa 
Translation table11 
GC content49% 
IMG OID640934216 
Producthypothetical protein 
Protein accessionYP_001475010 
Protein GI157376410 
COG category[K] Transcription 
COG ID[COG1278] Cold shock proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0154434 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000533264 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCATAATC GAATTGTAAA AGGGACCCTC GTTCGTTGGA AGGATGACAA AGGCTTCGGT 
TTCATTGAGC CTGAAACAGG TTCAGGTACT GACAGTCATA CCGATATCTT TATTCATGTA
TCTCAGCTCA GGCATATGAG CAGGCGGCCA CTGGAAGGGG ATACCATCTT CTTTCAAATT
GAGCATAAAC CCGGTGGCAA ACTTAATGCT ATTGAGGCGC GCATCGAAGG TGTCGAAGTC
AAAGCCCAGA CAGAAGCTAA AACTAAGTCT AGGCTGAAGT CTAAAAACCG TACTCCAATC
GGCCCCATTC TCTATCGCAT AGGGATCATG ATGGTGGTGC TGGCCATCGC AAGCTTTGCT
TACAATCGTG CCATCGCCCC CTTCCTTGCC AGCTCTTCAA CATCGGGTTT TGAGCTTGCC
GTCAATGATT CGCTGCAACA GCCCCCAAGC TCGGTACAAA ATGGCACTGC GCAGAAAGGT
ACTTCACAGT TAGGTACTTT ACAGATAGCT GAGGCATTTA ATAATCGGCA AAGTGGCCTG
CAGGTTAACA GCAGTGGGAC GGTCAGCAAG ATATTGAGCG ATGACAACGA GGGCAGTCGC
CATCAGCGCT TTATTCTCCG TTTATCTAAT GGGCAAACCC TGTTGATCGC CCATAATATC
GACTTAGCAC CACGGATAGC GGGCATAGGC GTCGGTGATA ATGTGGCGTT TTATGGTCAG
TATGAGTTCA ATAACAAGGG GGGCGTTGTA CACTGGACCC ATCATGACCC TCAAGGAAGA
CACCCCGGTG GCTGGTTAAA GCATAAGGGA CAAACCTACC AGTAA
 
Protein sequence
MHNRIVKGTL VRWKDDKGFG FIEPETGSGT DSHTDIFIHV SQLRHMSRRP LEGDTIFFQI 
EHKPGGKLNA IEARIEGVEV KAQTEAKTKS RLKSKNRTPI GPILYRIGIM MVVLAIASFA
YNRAIAPFLA SSSTSGFELA VNDSLQQPPS SVQNGTAQKG TSQLGTLQIA EAFNNRQSGL
QVNSSGTVSK ILSDDNEGSR HQRFILRLSN GQTLLIAHNI DLAPRIAGIG VGDNVAFYGQ
YEFNNKGGVV HWTHHDPQGR HPGGWLKHKG QTYQ