| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3278 |
|---|
| Symbol | |
|---|
| ID | 5612705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3979642 |
|---|
| End bp | 3980466 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640934216 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001475010 |
|---|
| Protein GI | 157376410 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1278] Cold shock proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0154434 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000533264 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCATAATC GAATTGTAAA AGGGACCCTC GTTCGTTGGA AGGATGACAA AGGCTTCGGT
TTCATTGAGC CTGAAACAGG TTCAGGTACT GACAGTCATA CCGATATCTT TATTCATGTA
TCTCAGCTCA GGCATATGAG CAGGCGGCCA CTGGAAGGGG ATACCATCTT CTTTCAAATT
GAGCATAAAC CCGGTGGCAA ACTTAATGCT ATTGAGGCGC GCATCGAAGG TGTCGAAGTC
AAAGCCCAGA CAGAAGCTAA AACTAAGTCT AGGCTGAAGT CTAAAAACCG TACTCCAATC
GGCCCCATTC TCTATCGCAT AGGGATCATG ATGGTGGTGC TGGCCATCGC AAGCTTTGCT
TACAATCGTG CCATCGCCCC CTTCCTTGCC AGCTCTTCAA CATCGGGTTT TGAGCTTGCC
GTCAATGATT CGCTGCAACA GCCCCCAAGC TCGGTACAAA ATGGCACTGC GCAGAAAGGT
ACTTCACAGT TAGGTACTTT ACAGATAGCT GAGGCATTTA ATAATCGGCA AAGTGGCCTG
CAGGTTAACA GCAGTGGGAC GGTCAGCAAG ATATTGAGCG ATGACAACGA GGGCAGTCGC
CATCAGCGCT TTATTCTCCG TTTATCTAAT GGGCAAACCC TGTTGATCGC CCATAATATC
GACTTAGCAC CACGGATAGC GGGCATAGGC GTCGGTGATA ATGTGGCGTT TTATGGTCAG
TATGAGTTCA ATAACAAGGG GGGCGTTGTA CACTGGACCC ATCATGACCC TCAAGGAAGA
CACCCCGGTG GCTGGTTAAA GCATAAGGGA CAAACCTACC AGTAA
|
|---|
| Protein sequence | MHNRIVKGTL VRWKDDKGFG FIEPETGSGT DSHTDIFIHV SQLRHMSRRP LEGDTIFFQI
EHKPGGKLNA IEARIEGVEV KAQTEAKTKS RLKSKNRTPI GPILYRIGIM MVVLAIASFA
YNRAIAPFLA SSSTSGFELA VNDSLQQPPS SVQNGTAQKG TSQLGTLQIA EAFNNRQSGL
QVNSSGTVSK ILSDDNEGSR HQRFILRLSN GQTLLIAHNI DLAPRIAGIG VGDNVAFYGQ
YEFNNKGGVV HWTHHDPQGR HPGGWLKHKG QTYQ
|
|---|
| |