| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3276 |
|---|
| Symbol | |
|---|
| ID | 5612703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3976661 |
|---|
| End bp | 3977818 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640934214 |
|---|
| Product | multidrug resistance protein D |
|---|
| Protein accession | YP_001475008 |
|---|
| Protein GI | 157376408 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0164618 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATC CCCCCCCGAT TTGGCTAATG GTAACCCTGT TGATGTTTCC TCAGGTCGTT
GAAACCATCT ATAGTCCATC ACTTCCCCAT ATTTCACAGG CATTTTGGGT TAGCTTTGAA
ACCGCATCCC AAACGCTTTC GGTCTACTTT ATTGCCTTTG CTATAGGTGT GGTGGTCTGG
GGGCGATTAT GTGACACCCT AGGCCGTAAA AAAGCGATGA TTTATGGATT AATCACCTAT
GGTATAGGCG CGTTCATCGC TCTATTGGCC GGAAACTTCG AAACCTTGTT GTTGGCCAGA
ATCATCTCGG CATTTGGCGC AGCTGTTGGC TCAATCGTCA CTCAAACCAT GTTGCGCGAC
AGCTTCGAAG GCCCTGAGCT TGGCAAGGTA TTTTCTGTGA TGGGAATGGG GATCTCAATC
AGCCCCGTGC TGGGCTTGAT GTTAGGCGGT GCTATAGCAC AAAACCTGGG ACACTTAGGC
GTATTTAGTT TTCTGCTAAG CCTGAGTCTG GTCTTATTAC TGCTAGGCCA ATGCTGCCTG
TCGGAGACAC GCCCACAACA CTTAACGCCG GTACCATTAT TGCCGTTGGC TAAGCAGATG
ATATGCAACG GACAAGTGAT GCGTAGTGCA ACCTTAGCAG CCCTGTTTAA CCTGATGCTC
TTTAGCTACT ATGCGCTGGC CCCCTTTATC TTCGCAGACC TTAACATGAG CTCGATAGCG
TTTGGCTATA GCGGCATCGC TCTGGGGCTC GGTTCATTGA TAGGCAGCCT GATTAATAAG
CGGCTGCTGT CGAGAGGTTG GCAAGCTGTG ACACTCATCA ATCTGGCATC GATACTCGCT
CTGTGTGGCG GTGTTGGTGT CTACCTGCTG CAGTCGAGCC TGGCTTTCTT GCTGCCCATG
GTATGTGTGG TACAGGCGTT CGGTATCGCC ATCCCCAATA TCCTCAGTCA GGCGCTGGTC
GATTATAAGC AGGTGGCGGG AAGCGCCGGC GCCCTGTTCG GTCTGGCCTA TTACCTGATG
TTGGGCGCCG GGTTGGCGCT GGCGGGAGTG CTGCAGAATC TGGGGCTGGT GTTACTGCTC
GCGGCGGGGC TGACGACTCT TCTTTGTCTG CTCAATCTCA AGAACGTAAC CCCGGTTCTG
TCGACGAAGG GAGTGTAA
|
|---|
| Protein sequence | MKNPPPIWLM VTLLMFPQVV ETIYSPSLPH ISQAFWVSFE TASQTLSVYF IAFAIGVVVW
GRLCDTLGRK KAMIYGLITY GIGAFIALLA GNFETLLLAR IISAFGAAVG SIVTQTMLRD
SFEGPELGKV FSVMGMGISI SPVLGLMLGG AIAQNLGHLG VFSFLLSLSL VLLLLGQCCL
SETRPQHLTP VPLLPLAKQM ICNGQVMRSA TLAALFNLML FSYYALAPFI FADLNMSSIA
FGYSGIALGL GSLIGSLINK RLLSRGWQAV TLINLASILA LCGGVGVYLL QSSLAFLLPM
VCVVQAFGIA IPNILSQALV DYKQVAGSAG ALFGLAYYLM LGAGLALAGV LQNLGLVLLL
AAGLTTLLCL LNLKNVTPVL STKGV
|
|---|
| |