| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3273 |
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| Symbol | |
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| ID | 5613677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3973739 |
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| End bp | 3974455 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934211 |
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| Product | cyclic nucleotide binding protein, putative |
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| Protein accession | YP_001475005 |
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| Protein GI | 157376405 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.715975 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0894571 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCCAC AGGCCAATTC AGTTTTATTT ACCAATGTAT TTACTATGCA GTTAAAACCA
CTTTCGAAAG GTCGCTTTCA TACGCTTTGG GAGCAGGAAC ATGGCGAGGT CGAGCGGATC
ATGCTCGATT GCATCAGTGA AACTAAAGTG GTGCCGGCTC ATCAAAAACT GATGCAGCAG
GGGCAGAAGG TGAGCTCACT TATCTTAGTG AAACAGGGTC GTGTCTCTTT AGGTTACTCA
GCCCGCAATG GTCGCAGCTT TCAACTCGGC ACCATGGATT GCGACTCACA GCTCTTTGGC
GAGATGGAGT TTTTTAGTGA CTACCTGTGT CAGCTCGACA TTATTGCCGA AGAGAATGTC
GAAATTGAGG TGATCTGTGG CGAGAAACTG CAGCTGGCGT TAACGAACAA ACCTATGTTT
GCGCTTTTCT TTGCCAGTGC AATTGCTATC GATTATCAAG ACACCATAGA TATTCTGACT
CGTCGTATGT TATATCCTAT TGCCTATAAC ATCGCTTATG ATCTGTATCA TCAGCATCTT
AACGACCAAC CCGTCGATGG CTTTACTAAG TGTTATCTGG AAGCGGAGCG GTTTGCGACA
ACCGATCGCG TGTATCGTCG CTCGGTAAAG AAATTAGAGG AGCTGGGGCT GATCCAAAGG
GATAAGGAGG GCATCGTTAT CTGCGATTTC GAGGGACTCA AAGCCTATAT CGAATAG
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| Protein sequence | MSPQANSVLF TNVFTMQLKP LSKGRFHTLW EQEHGEVERI MLDCISETKV VPAHQKLMQQ
GQKVSSLILV KQGRVSLGYS ARNGRSFQLG TMDCDSQLFG EMEFFSDYLC QLDIIAEENV
EIEVICGEKL QLALTNKPMF ALFFASAIAI DYQDTIDILT RRMLYPIAYN IAYDLYHQHL
NDQPVDGFTK CYLEAERFAT TDRVYRRSVK KLEELGLIQR DKEGIVICDF EGLKAYIE
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