| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3216 |
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| Symbol | |
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| ID | 5613431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3899480 |
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| End bp | 3900682 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934154 |
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| Product | tryptophan synthase subunit beta |
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| Protein accession | YP_001474948 |
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| Protein GI | 157376348 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0133] Tryptophan synthase beta chain |
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| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.428268 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGT TCGAATTCGC CCCCATGCCC GACAATCAAG GTTTTTTTGG TGAGTATGGC
GGGCAGATTA TTCCGCCTGA GCTAAAGAGT GCGATGGATG CGATTAATCA AGCCTACGAA
GAGATTCGAC AGACTCAAGG CTTCCAGGAT GAGCTGATGC AGCTGTTCCA GGACTATGTG
GGTCGCCCAA GCCCCATCTA TCATGCCAAA CGCTTAAGCG ACAAACTCGG CGGCGCGCAG
ATCTATCTCA AGCGTGAAGA CCTTAACCAC ACCGGGGCTC ATAAGATCAA TCACTGCCTG
GGTGAGGCGT TACTCGCCAA GTACATGAAC AAGAAGAAGG TGATTGCCGA AACTGGTGCC
GGCCAACATG GTGTCGCACT TGCTACTGCC TGCGCCTTGG TGGGGATCCC TTGTGAAATT
CATATGGGTC AGGTCGACAT AGAGAAAGAG CATCCTAACG TTACCAAAAT GAAAATCTTA
GGCTGTAAGC TGGTGCCTGT CACCCAAGGT ACTGCCACCT TAAAGGACGC TGTCGACAGC
GCCTTTGTGG AATACCTGAA GAATCCGAAA GACTATCTTT ATGCTATCGG CTCTGTCGTT
GGGCCTCATC CTTTCCCTAA GATGGTGCGT GATTTTCAAA GCATTATCGG TCGTGAGGCC
AGAGAGCAGT TTCAACAGAA ATTTAATAAA CTTCCCGATA TCATCACTGC CTGTGTGGGG
GGCGGCTCGA ACGCCATCGG CCTATTCACT GCATTTCTGG ATGATAGCGA GGTGAAAATT
GTCGGCGTCG AACCTGCCGG TAAAGGGCTG GATACCACGG AGCACTCGGC TACCCTCACT
TTGGGCACGC CGGGCGCCAT TCATGGCTTT AAATGCTATC TGCTGCAAGA TGAAGCGGGT
GAGCCACTAC CGGTTCACTC CATCGCCTCA GGCTTAGATT ACCCGGGAGT AGGTCCCCAG
CACTGTTACC TCAAAGATAT TGAGCGTGCA GAATATGATT CGGTCACAGA TGAAGAGTGC
TTAGACGCCT TTATGACACT GTCGCGGGTC GAGGGGATTA TTCCGGCTCT GGAGAGTGCC
CACGCCGTGG CTTGGGCGAT GCGCGAAGCC GCCAAGCTAC CGAAAGAGTT GCAAATTTTA
GTCAACCTGT CTGGCCGGGG TGATAAAGAC GCCGACTATG TAGCCGACAA GCTTGGTCTT
TAA
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| Protein sequence | MSKFEFAPMP DNQGFFGEYG GQIIPPELKS AMDAINQAYE EIRQTQGFQD ELMQLFQDYV
GRPSPIYHAK RLSDKLGGAQ IYLKREDLNH TGAHKINHCL GEALLAKYMN KKKVIAETGA
GQHGVALATA CALVGIPCEI HMGQVDIEKE HPNVTKMKIL GCKLVPVTQG TATLKDAVDS
AFVEYLKNPK DYLYAIGSVV GPHPFPKMVR DFQSIIGREA REQFQQKFNK LPDIITACVG
GGSNAIGLFT AFLDDSEVKI VGVEPAGKGL DTTEHSATLT LGTPGAIHGF KCYLLQDEAG
EPLPVHSIAS GLDYPGVGPQ HCYLKDIERA EYDSVTDEEC LDAFMTLSRV EGIIPALESA
HAVAWAMREA AKLPKELQIL VNLSGRGDKD ADYVADKLGL
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