| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3203 |
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| Symbol | |
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| ID | 5612730 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3873731 |
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| End bp | 3876028 |
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| Gene Length | 2298 bp |
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| Protein Length | 765 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934141 |
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| Product | omega-3 polyunsaturated fatty acid synthase PfaB |
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| Protein accession | YP_001474935 |
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| Protein GI | 157376335 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3321] Polyketide synthase modules and related proteins |
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| TIGRFAM ID | [TIGR02816] PfaB family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCAAGC CGACACCCCC TGTTAATTCA GCAGCGAGCG TCAGTGATCA AGTTATCAAG
AGTGAGATGC CACTGCGCAT CGCACTCTTG GTGCTTCCTG CGCCACTAAA TTTAAGCATG
AGTTTAACTG CCGATACGCC TGAGATGGCT AAGCAGCTAT CTGTGCTATT ACCAGATCTG
CATAGCGCTA AATTGCTAGA AACCACTGAA CTTGTCTCTA TCAAGGTCGA TGATTTTGAA
GCTAACTTAA CAGCGACTAT CGAGTCGATT GAGCAAGGTA AGATAGTGCA GATCTCAACA
GAGACCAGCT CACTGTTGAT GATGCATTCA CTAAAAGCGG CGCAAAATAG AATTCACCCC
CACGCGCAAC TTGCAGCGAT GCAGATGCAG TCAGCAAGCA CAGCTCTTGT AGAAAAGTCG
CTTACAGACA CCTGTATGCA TAAGGCATTA AGCCAAGCAA AGCGCAAGTC TGACAGTGTC
AGCAAGCGCT TCGATCTGCC ACAGCTTAAT AGCACTGAGC AGTTTGATGC CGTGTGTACG
TTAATCAAAG ATCTTGCCTC TCGTACACAC CATAGAGATG CAGCATCGAT GGGTCCTAAG
CAAGCCACTA GCCACTACTG GTTTACCGAT CACCATCAAG CACGTGTGGT GGCGATTAAC
CTAACGAATA GCATCAAAGA TCAGAGCGAC AGTGCCCACA GCGCAGATAA GAGCTGCATC
AGCTTTATTG TCTCCCAAGG CACAGGCTTT ATCGCACCAA AATCGATTAT CGATACTAAG
CGATTGCAGT TTGTTGTTTG TGCAGACAAC CAAGCTGGAC TGCTCGCCGA GCTTACAAAG
ATAAAATCGA AACTCACTAC AGAGCCTGGT TTACTGCTAA CACAGATGCG CGATAACCTC
GTCTCATATG AGAAGAGTCA CAGTGATACA GCTGGCATCA GCAGGTACGC CATTACTCTA
CAGGCAAGTT CAATTGAAGC TATGCTTCAG GAGATCACGG CCATGGGTGA AACACTGCCA
AATGTAATGA GTGATAATAG CCTAACTCAC TCATCTCAAT ATCGCACACC CGCAGGCAGC
TATTTTACTG CTGAGCCTTT AGGCGGAGCA GATCAAAGTG GTCTTGCATT TGTCTACCCT
GGTGTCGGAA CTGTCTATAG CGATATGTTT AGTCAGCTAC ACAGATACTT TCCATCACTC
TATTCACAGC TCGAACGTGA AGGTGATCTA AAGTCTATGT TTCAAGCCGA TGCTATCTAT
CACTTAGATC CTAAAGTGAC CCCAGCGATG CAGCTTGGCG ATCTCGCTAT TGCAGGTGTG
GGTAGCAGCT ACCTACTGAC TCAGTTGTTA GTGAAACAGT TTAATATCAC GCCAAACTTT
GCCTTAGGTT ACTCTATGGG TGAGGCATCG ATGTGGGCAA GTCTTGGTGT GTGGAACGCT
CCCCACGCCT TGATAGAGAA GACGAAAACC GATCCACTAT TTACCAGCGC CATTTCGGGT
AAGCTCACTG CAGTACGCAA AGCGTGGCAG TTAACCAATA GTGATGCCGA TATTGTCTGG
AATAGCTTTG TCGTTCGCTC ACCAGCCGCG TCGATTAAAG CGCTACTCCC AGAGTTCCCC
CACGCCTACC TTGCCATTGT TCAGGGTGAT ACCTGCGTGA TTGCAGGCTG TGAGACTCAG
TGCCGTGAGC TATTAGCACA GATGAAAAAG CGCGGTATTG CAGCGAACCG AGTCACGGCC
ATGCATACCA CTCCAGCGAT GGAGGAGCAC GGCAATGTTG AGCAGTTCTA CAATCAACCG
CTTGAAGAGA CGCTGCCAAA TGATATCAAA TTTATCAGTG CAGCTTCAGG TGAGAGCACA
GTATCAAATG CTAATGGTGG TCTCGACAGT CAAGTTGTTG CCCGCTCAAT CGCCGATACT
TTCTGCAACA CCTTAGACTT CACAGCACTG GTTCACAGTG CTCAGAAGCA AGGCGTTAAG
CTATTTGTCG AGCTAGGTGC AGATAGACAA AACTGTACGC TCATCGACAA GATCGCTAAA
CAAGATCGCC AATGTGGCGG CGAGTCGACA GACTTTCCTT GCTGCACAGT GCCCGTCAAT
GCAAAGGGCG GTGATGATAT CACTACCCTG CTTAAAGCAT TAGGCCAACT TATTAGTCAT
CGAGTTCCAC TCACAGCTCA GCCACTTATT GAGGGATTAA ATCGTGAAAT CGCGCTTTCT
CAACTGCAGA AAACAACGAC CACGAAGCAG CTCAAGAGTG AACCTATGTC GAATCTAACA
TTACAAGGGG AAGTTTAA
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| Protein sequence | MVKPTPPVNS AASVSDQVIK SEMPLRIALL VLPAPLNLSM SLTADTPEMA KQLSVLLPDL
HSAKLLETTE LVSIKVDDFE ANLTATIESI EQGKIVQIST ETSSLLMMHS LKAAQNRIHP
HAQLAAMQMQ SASTALVEKS LTDTCMHKAL SQAKRKSDSV SKRFDLPQLN STEQFDAVCT
LIKDLASRTH HRDAASMGPK QATSHYWFTD HHQARVVAIN LTNSIKDQSD SAHSADKSCI
SFIVSQGTGF IAPKSIIDTK RLQFVVCADN QAGLLAELTK IKSKLTTEPG LLLTQMRDNL
VSYEKSHSDT AGISRYAITL QASSIEAMLQ EITAMGETLP NVMSDNSLTH SSQYRTPAGS
YFTAEPLGGA DQSGLAFVYP GVGTVYSDMF SQLHRYFPSL YSQLEREGDL KSMFQADAIY
HLDPKVTPAM QLGDLAIAGV GSSYLLTQLL VKQFNITPNF ALGYSMGEAS MWASLGVWNA
PHALIEKTKT DPLFTSAISG KLTAVRKAWQ LTNSDADIVW NSFVVRSPAA SIKALLPEFP
HAYLAIVQGD TCVIAGCETQ CRELLAQMKK RGIAANRVTA MHTTPAMEEH GNVEQFYNQP
LEETLPNDIK FISAASGEST VSNANGGLDS QVVARSIADT FCNTLDFTAL VHSAQKQGVK
LFVELGADRQ NCTLIDKIAK QDRQCGGEST DFPCCTVPVN AKGGDDITTL LKALGQLISH
RVPLTAQPLI EGLNREIALS QLQKTTTTKQ LKSEPMSNLT LQGEV
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