| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3195 |
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| Symbol | |
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| ID | 5611996 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3853586 |
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| End bp | 3854269 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934133 |
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| Product | putative ABC transporter, ATP-binding protein |
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| Protein accession | YP_001474927 |
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| Protein GI | 157376327 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTATTC AAACGACTCA GCTTCGTAAA ACTTATAATC AGGATACGGA TTTTCCTGTT
CATGCGGTAA AGCAGCTCGA CTTGAGTATT GAACAGGGGG AGTTTGTGGC TGTAATGGGG
CCATCTGGCT CTGGTAAAAC CACGCTGCTG AATATGATTG GCGGCATAGA TATCCCTAGT
GCCGGTACCG TGGTTATTGA CGGCATCGAT ATTTGCTCAC TAAAAGATCA GGCACTTATT
GCCTTTCGGC GTGACAATAT CGGCTTTATC TTTCAGGACT ATAGCTTGTT GCCGGTACTG
ACAGCCCTTG AAAATGTTGA ATTTGTGATG CAACTGCAGG GACACAGTGA GAAGGAGTGC
AGAGCGCGGG CTATCGCCTT GTTGAATCAG GTCGGGCTCG GGGATCAGTT ACATAAAATA
CCATCGAAAC TCTCCGGCGG GCAGCAACAG AGAGTGGCCG TCGCGCGAGC ATTAGCACCG
AGCCCCAGAT TTGTGATGGC CGATGAGCCA ACGGCTAATC TGGATGCTAA AAGCACGGCG
GAACTACTCG ATATAATGCA GCAGCTCAAC GAGAAGGAGG GCACAACCTT TATCTTCTCG
ACCCATGATC CCAGGGTGAT AAAACGGGCC AGAAGGGTGA TCGTATTCGA AGATGGTCAG
TTGACCGAGG ACAGAGCTCA ATGA
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| Protein sequence | MSIQTTQLRK TYNQDTDFPV HAVKQLDLSI EQGEFVAVMG PSGSGKTTLL NMIGGIDIPS
AGTVVIDGID ICSLKDQALI AFRRDNIGFI FQDYSLLPVL TALENVEFVM QLQGHSEKEC
RARAIALLNQ VGLGDQLHKI PSKLSGGQQQ RVAVARALAP SPRFVMADEP TANLDAKSTA
ELLDIMQQLN EKEGTTFIFS THDPRVIKRA RRVIVFEDGQ LTEDRAQ
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