| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3032 |
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| Symbol | |
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| ID | 5613325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3663288 |
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| End bp | 3666056 |
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| Gene Length | 2769 bp |
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| Protein Length | 922 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933969 |
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| Product | polysaccharide export protein |
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| Protein accession | YP_001474764 |
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| Protein GI | 157376164 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.190653 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0184914 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTACTAA AAGTAAAAAA ACTCATTATA GTAAGCATAG GTGTTATATG TTTAGCAAGT
GGGGCGGTTC AGGCTGTTAC CCCTTCACCG CAAATGATCG AGCAATTCAA GACCTTACCT
AAGGCAGAGC AAGAAAGGCT TGCCAAGCAA TATGGGCTCG ATCCATCAAT GCTAAATGCT
GACTCTACCA CTACTCAAGA AGGGTTTGAA AATCAGTCAA TTATCAACCC AAGAGAAGTG
GAAGATGAAA AAGCGAAGGA GTTGAAAGAG CAGCAGATCA TCGTAGATGA AGTCACTCAG
TTCTTAAAAG ATCAAAAAGA TAAAGATACA AAAAAATTAC AGCCATACGG TTATGACCTG
TTTGAAGGTG AACCAATGAC TTTCGCACCT GTATCGGATA TTCCGGTACC GGGTGAGTAC
CTGGTTGGCC CTGGTGATAA CATCAAGGTT CAGCTTTATG GTAAAGAGAA TAAAGAGTAT
GACTTAGTCA TCAGTCGTGA CGGTAACATT CAGTTTCCTG AACTGGGTCC AATCTCAGTC
TCTGGTTTGA AGTTTGAAGA TCTGCGTAAG ACGGTTTCGG CACGTATTAA GCAGCAGATG
ATCGGGGTAG AGACCAATAT CACCATGGGT GAACTACGCT CTATTCGCAT CTTTATCGCC
GGTGATGCCT ATAAACCAGG TTCATATACC GTATCCAGTC TCTCTACAAT TACTCAGGCA
CTATTTGTTG CCGGTGGTAT TGCTGAAATT GGCTCGTTAA GAAACATCCA ACTCAAGCGT
AAAGGTAAGC TTTTAGGCAC ATTAGACCTG TATGATTTGC TGATGCGGGG TGATGCATCG
AACGACATGC GCCTGCGCTC AGGTGATGTG GTATTCATTC CATCTGTTGG TGGGCTTGTC
TCGGTCGACG GTGAAGTCCG ACGCCCGGCT ATCTACGAGC TTAAAGGTAA AGAGTCCATG
GGTGAGGTTA TCGCCATGGC TGGTGGTCTC AAAGGCGCTG CCTATCCAAG AAGTAGTAGT
ATCGAGAGAT ACAATAAGCA AGGTTTGAAA ACGATTAAGA ATGTCGATCT GACAGCCGAT
AAAGGCCGAG CTGTGATAGC CAAAGCTGGC GACATTGTTA AAGTTAAAAC GGCTACAACT
CAATTCGAAG ATGCGATTAC CGTCCTTGGT GCAGTAATTC GTCCGGGTAA GTATCAGTGG
TATCAAGGTC AAAGGGTCAG CGATCTGCTA CCATCAATCT GGGGCGATTT CCAGCCTTCT
GCCGATCTCG ATTATGCGAT TATCATCAGA GAGATCAATA AGCACGGTGA TATAGAGGTG
CATCAATTTG CACCGTCGCA GGCGATTATC ACCAAAGCGG CTACAGAAGA TTTAGAGCTC
AGCCCACGTG ACATAGTAAT GGTGTTTAAC TTCAGTGATG ATGCACAGAA TCGATTCGAA
CTCAATAAAC TCGTTAGGGA AAGAGTCGAA AAAGTTGTAC AACTTGTCGG TGACAGCTCT
CTTTCGAAAG ATCTATTCAA AGCAGGTTTT TCCCAGTTAG AAAATCAAAA ACTGCGCAAC
CGCAGCCAAC TTGGTGGCGT GGTAGTAGCT AAAGAGCAGG TAGAGGATGA CGAAGCTTTA
GCTATAAAAG GTGAAGTCAA CAGGATGATG GCTAACCTGT TTGAAGATCC TGAACTCATC
AAACTCAGTG GTTTGATGAA CCGTAGTGAA CTGCTTTATC CAATCATCAT GAAGCTAAAT
CATCAGAGCC GTTCGGGCGA TGGTGTACAG GTAGTTGCCA TTAAGGGGCA GGTCTACCAC
GAGGGTATGT ATCCACTCGC AGTTAATGCC AGAATTTCAG AGGCTGTTAA AGCGGCGGGA
GGACTGAAAG AGGGCGCCTA TACATCCAGA GCCGAACTGA CTCGCACCGT CACCGTTGCA
GATGGTTCGA ACATCACCCA CCAAAATATC GAACTATTAG CGGCATTAAA TGGTGAGCCT
AGCTCAAACT TGACATTAAA AGGCCGAGAT ATCCTGACTA TCATGACCAC GCCTGAGTGG
CAGGAAAACA AGTCAGTCGA AATTCGTGGT GAGGTTCGCT TCCCGGGTGT CTATAACATT
CGCCGTGGTG AAACGCTTAA AGAAGTCGTT GAGCGAGCAG GTGGCTTTAC TAACTTTGCT
TATCTTCCTT CATCGGTATT CGTTCGTGAA TCGGTCCGTT TGCAGGAACA GCTGGAAATT
AAAAAGTTAG CCGATCAGCT TCGACGGGAT ATCGCTACTC GTGGTGTCTC TAAAGATGGT
GATGTTGTGA ATTACGCCGA TGCCCAGTTG ATGTTAACGG ATCTCGAGAA TATCGAAGCC
GTTGGTCGTC TCGTTGTTGA CCTTTCAGCC ATCTCAATTG GCATCGAACA AGCTGATCTT
CAGTTGGAAG ATTCTGATGT TCTTTACGTG CCATCAACCA AGCAAACTAT AGCAGTAATG
GGTGAAGTGC AGCACGCAGC AACTCACAGA TATAAACAAG GGTTAACACT GGATCAGTAT
CTGAATATGT CAGGTGGTGT GAGAGAGAGA GCCGACGATG GCAGAACTTA TGTTGTGAAA
GCTAATGGCT CAGTGATGCT ACCTAGCCGC TCAATGTGGT TTAGCAGTGA AGACCGTTTA
CAACCGGGTG ACACCATTAT TGTACCACTG GATACAGAAT ACAAAGATAA TTTAACCCTT
TGGACTCAGG TTACCAGTAT CATCTATAAT ACAGCCGTTG CATTTGCTTC AATTTCTAAT
ATTAAATAG
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| Protein sequence | MLLKVKKLII VSIGVICLAS GAVQAVTPSP QMIEQFKTLP KAEQERLAKQ YGLDPSMLNA
DSTTTQEGFE NQSIINPREV EDEKAKELKE QQIIVDEVTQ FLKDQKDKDT KKLQPYGYDL
FEGEPMTFAP VSDIPVPGEY LVGPGDNIKV QLYGKENKEY DLVISRDGNI QFPELGPISV
SGLKFEDLRK TVSARIKQQM IGVETNITMG ELRSIRIFIA GDAYKPGSYT VSSLSTITQA
LFVAGGIAEI GSLRNIQLKR KGKLLGTLDL YDLLMRGDAS NDMRLRSGDV VFIPSVGGLV
SVDGEVRRPA IYELKGKESM GEVIAMAGGL KGAAYPRSSS IERYNKQGLK TIKNVDLTAD
KGRAVIAKAG DIVKVKTATT QFEDAITVLG AVIRPGKYQW YQGQRVSDLL PSIWGDFQPS
ADLDYAIIIR EINKHGDIEV HQFAPSQAII TKAATEDLEL SPRDIVMVFN FSDDAQNRFE
LNKLVRERVE KVVQLVGDSS LSKDLFKAGF SQLENQKLRN RSQLGGVVVA KEQVEDDEAL
AIKGEVNRMM ANLFEDPELI KLSGLMNRSE LLYPIIMKLN HQSRSGDGVQ VVAIKGQVYH
EGMYPLAVNA RISEAVKAAG GLKEGAYTSR AELTRTVTVA DGSNITHQNI ELLAALNGEP
SSNLTLKGRD ILTIMTTPEW QENKSVEIRG EVRFPGVYNI RRGETLKEVV ERAGGFTNFA
YLPSSVFVRE SVRLQEQLEI KKLADQLRRD IATRGVSKDG DVVNYADAQL MLTDLENIEA
VGRLVVDLSA ISIGIEQADL QLEDSDVLYV PSTKQTIAVM GEVQHAATHR YKQGLTLDQY
LNMSGGVRER ADDGRTYVVK ANGSVMLPSR SMWFSSEDRL QPGDTIIVPL DTEYKDNLTL
WTQVTSIIYN TAVAFASISN IK
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