| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3000 |
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| Symbol | |
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| ID | 5613165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3629003 |
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| End bp | 3629995 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 640933937 |
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| Product | NDP-sugar dehydratase or epimerase |
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| Protein accession | YP_001474732 |
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| Protein GI | 157376132 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.82127 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTAA TAATTTTTGG AGTGACAGGA AACTGTGGTA CTTATTGTGC TCAAAAATTT
CTAGAAGATG GATGGACGGT CTACGGTGTA GGTCGCTCTG AATCCAGTAT AAATCATCCT
AATATGAACT TCATTAAAGG TGATATTCGA ACCGACGAAC TGTATACAAA ATTACCAACA
GATGTAGAGT TAGTTATTAA TTTTGCAGGT GTTCAACCAA GTATATTAGC AACATCAGAA
AATACAGATC TTACTGCTAC CTTAAACGCA TATCTTGATG TAAATATAAA TGGCGTATTT
AAAGTGCTAG AGTTTGTACG ACAGAATAAT ATAAAAAACT ATGTATATAC AACTTCTCAC
CGAGATTATG AGAATCACTG GTCCCCTAAT AATTTCTTAA AGAATGACTT ACCTCCGGCT
ATTAATTACA AGGGTGATCA TGTGATGTAC GCAATCACAA AAACTACCGG TAAAATGATA
GGGGATTATT TTGGAGAGGC CTTCGGAGTT AGGGTGTTTA ACTTACGCCT ACCGATGATA
TTCATGGTTC CTGAGTCTCC ATACTATCGA AATAATGGTG AGCCAACATT AATGCCTTTC
TTAAAAGTTA TCCGTGATGC AATGGAAGGA AAGCCTTTAG AAATTTGGGG GGACCCTCAA
ATGGTAAGAG ATTATGTACA TATAGACAAC TTAGTTGCAC TTATCAAATC ATGTTATAAG
AGTTCTTTGA ATAGTGGGAC TTTCAATGTA GGAACTGGTG AAGCGGTTAC TACTGAAAGA
TTTATTAAAA CCATTGGTAA AACATTTGCG CCGGACCCAG AGAATGTTGA GTATATCTAT
AAAGAAACTA AACGTACTTA CAAATGTGCT ATTTATGATG TTTCAGAACA AAAAGAATTG
TTGGGCTATC AACCTGTTTT ACTTGAAGAG ATGCTATTCA AACTAAAAAA TGATATGACC
GAAAAAAATT GCATGGAAAA ATGGGGATGG TAA
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| Protein sequence | MKLIIFGVTG NCGTYCAQKF LEDGWTVYGV GRSESSINHP NMNFIKGDIR TDELYTKLPT
DVELVINFAG VQPSILATSE NTDLTATLNA YLDVNINGVF KVLEFVRQNN IKNYVYTTSH
RDYENHWSPN NFLKNDLPPA INYKGDHVMY AITKTTGKMI GDYFGEAFGV RVFNLRLPMI
FMVPESPYYR NNGEPTLMPF LKVIRDAMEG KPLEIWGDPQ MVRDYVHIDN LVALIKSCYK
SSLNSGTFNV GTGEAVTTER FIKTIGKTFA PDPENVEYIY KETKRTYKCA IYDVSEQKEL
LGYQPVLLEE MLFKLKNDMT EKNCMEKWGW
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