| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2959 |
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| Symbol | |
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| ID | 5610623 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3583856 |
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| End bp | 3585583 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933899 |
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| Product | TrkA domain-containing protein |
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| Protein accession | YP_001474694 |
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| Protein GI | 157376094 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0471] Di- and tricarboxylate transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCTAG ATGCTTATTT AACTATCGGA ATATTTCTCA CGACGATTGT GGGGCTTATC
CGGTTTCAGA GTCGACCGGC CGTCGTGTTC GGTGTGGCTC TGTTGACTCT GGTCGGGTTG
AATCTGGTCT CCAAAGAGCA GCTGCTTTCG AGTATGTCCA ACCCCGGGCT AGTGACCTTG
GTACTCTTGA TCTTGTGCTC TTTTGCACTG GAAAAGACAC GCCTGCTGCG TGTTATCGCC
TCAAAAGTGA TAGTGAGTAG TTACAACGCT ACCTGGCTAC GCTTATTTGG TACCACCGCC
TTGAGTTCGG CTGTGCTGAA TAATACTGCA GTGGTGGCGA CCTTGCTTTC GCCTGTTCGC
AATAACCCTC ATCACTTTGC CAGTAAGTTA TTACTGCCTC TCTCCTATGC CGCGATCTTG
GGTGGAACGT TAACCCTCAT CGGTACCTCG ACCAACCTGA TTGTGAACAG TCTCTATATC
GATGCGCAGG GGCAATCGTT GAGCTTCTTT TCGTTCACCG CGATCGGTGT GTTATTGGTA
TTGGCTTGTG GCTTAGTGTT GAGAGTGGCG TCTCGTTGGC TCCCGGAAAT TGAGCATAAA
GAGACCTGTT CGAAAGGCTA TTTTATCGAT GCGAAAGTGG TCGATGGCTC CGAGTTAATT
GGCCGTTCGG TAGAAGATAA TGGTTTAAGG CATCTCGAGT CTCTGTTTTT GGTTGAAGTG
GTCCGCGATG GGCGTTTAAT CAGCCCGGTA ACGCCCACGG AAGTGCTGCA ACTCGATGAC
AGGCTTATCT TCAGCGGCGA TATCACTAAG ATGATGCAGC TGAGTCAGTT CTCTGGACTC
GAGATGTTTG CCGAGAAAAA TGGCCTGTTA GACTCGAACC TGACCGAAGT CGTCGTTAAG
CAAGAGAGTG TTTTGATCGG TAAAACCTTA AAAGGAGCCG GTTTCAGGGC ACTGTTTGAT
GCCGCCGTGG TTGCGATCAG GCGTGATGGT GAGGAGGTAT CGGGTAAGTT AGGTGAGGTC
GTGATCCAAA CCGGTGACTT TTTGATGCTA GCCGTGGGCG AGGATTTCAA GTCTCGTCGT
AATATCAGTA AAAACTTCAT CGTCATCAGT GGCGTCGAGC CAGAAACCCG TATCAATGGT
CATAAAGCCT GGCTCTCTAT CGGTGGTTTT GTGTTAACTA TCGCCTTGGC GGCGACCGGG
GTTATTGAGA TGCTGCAGGG GTTAATACTA CTCCTGGGTG TGTTGATATT TAGTCAATGC
CTTAACGTAA ACGAAGTCGT TCGCCGCTTT CCGGTCGATA TCTGGCTTAT CGTCTCTTCG
GCAATTCTGC TCTCCCATGC CTTAGTCAAT ACCGGCGTCG TTGAGCTGTT AGCCCATTGG
GTGAATGGGG TCACGGATAG TGATCACCTC TATCTGGCCT TGATCCTGGT TTATCTGATG
ACTTGGTTAT TGACTGAGCT GGTGACGAAC AATGCTGCCG CCGCGCTTAT GTTTCCCATC
GCTTACAGTA TCGCATTAGG TTTCGGGGTC GATATTTTAC CATTCGTCAT GACCGTGGCC
TTTGCTGCCA GTGGTAGCTT TATCAGCCCC TACGGATACC AGACAAACTT GATGGTCTAC
AACGCAGGCC AGTATCGGTT AATGGATTTT ATCAAAATAG GTCTACCCGT CAGTCTGGTG
TATGCCTTTA TCGTATTAAC CGCCGTACCG ATATTTTTTC CGTTTTAG
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| Protein sequence | MSLDAYLTIG IFLTTIVGLI RFQSRPAVVF GVALLTLVGL NLVSKEQLLS SMSNPGLVTL
VLLILCSFAL EKTRLLRVIA SKVIVSSYNA TWLRLFGTTA LSSAVLNNTA VVATLLSPVR
NNPHHFASKL LLPLSYAAIL GGTLTLIGTS TNLIVNSLYI DAQGQSLSFF SFTAIGVLLV
LACGLVLRVA SRWLPEIEHK ETCSKGYFID AKVVDGSELI GRSVEDNGLR HLESLFLVEV
VRDGRLISPV TPTEVLQLDD RLIFSGDITK MMQLSQFSGL EMFAEKNGLL DSNLTEVVVK
QESVLIGKTL KGAGFRALFD AAVVAIRRDG EEVSGKLGEV VIQTGDFLML AVGEDFKSRR
NISKNFIVIS GVEPETRING HKAWLSIGGF VLTIALAATG VIEMLQGLIL LLGVLIFSQC
LNVNEVVRRF PVDIWLIVSS AILLSHALVN TGVVELLAHW VNGVTDSDHL YLALILVYLM
TWLLTELVTN NAAAALMFPI AYSIALGFGV DILPFVMTVA FAASGSFISP YGYQTNLMVY
NAGQYRLMDF IKIGLPVSLV YAFIVLTAVP IFFPF
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