| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2951 |
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| Symbol | |
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| ID | 5610685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3574488 |
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| End bp | 3576638 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933891 |
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| Product | WecB/TagA/CpsF family glycosyl transferase |
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| Protein accession | YP_001474686 |
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| Protein GI | 157376086 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
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| TIGRFAM ID | [TIGR00696] bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family
[TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.765922 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACTC AGACTCATAT CACTCAAACG GGCATTAAAC CGTTTTCGGT AAGAGCTATC
GACATCCTGG TAGCAGTATT ACTGATAGCC GTGGCCTCAC CGATATTAAT ACTCAAGTAT
ATCTATAGAA GATGTCGTTA TGGCTCTGCC ATTGAATATG TCTACATCTA CGGTTTGGAC
AATACACAGA TAACTCTGTA TCAATTCACC GGAGAGGGGA TCTGTTGTCA ATGGCCCCAT
CTGCTCAACT TACTAAAGGG TGACATTTCA CTGCTGGGCA CGGAGCAGAG CTATATTTTT
GAAGAGGCCA GTGCTCATAA CCCAGCCTCT TCCTTAACCC ACAAGCTCTC AACCAACCAG
CTCTCAAATC TGACGGAGAT AAAACCGGGC CTGCTCTCTT TCAAACTCAT GCATCAACAG
GTGGGATTAA GTTTCGAAAA TCAGGATAAC GCCATAATCA ACGCTCACCG GAGCGCACTA
AGCTACCTGC TCGCCATCTC CAGAACTCTC GTCATCTGGT TATTCTCGAG CCATGACGCT
AACAAGCACA CGAAAACGAT CCCTCTGTTT GATATCGAGT TGAACAACTT GAGTATGTCT
GAGTTACTCA CAAGGATCAC AAGTCAAGCA AGACAAAGTA GAGCACTACC CATGTATAAA
CAAGCCGTGG ATAAACAAGC GATGAATAAA CCAGCCATGG CTCAATACGC ATTTGTTAAT
GCCGATTGCA TGAACATCAG CATAAAAAAC AGCCAGTACC GACATTGCCT GCAAAATGCC
TGCGACATGG TTTTTGCCGA CGGTTCAGGG ATCAGACTGG CAAGCCTGTG GAAAGGCTTA
GCACCGAAGG ACAATTTGAA CGGTACCGAC ATGTTCCCCC TATTGTGCCA GCAACTTGCC
GATAACGGGC TCTCCCTGTT TCTCTTAGGG GGGGAAGAGG GAATAGCGGC ATCGGCAGCA
GATAAAATGC AGTGCAGATT TCCAAGACTC AAGGTTGCCG GCACTCACCA CGGCTTCATC
GATGATCCCA AGCTTAATGA TGCGGTCATC AAACAGATAA ATGAATCAGG GGCATCGGTA
TTACTCGTCG CCATGGGGGC GCCCAAGCAG GAGCTTTGGC TTGCGAAGCA TAAACACAGA
CTCGATGTCG CCGTCGGTAT CGGGGTTGGC GGACTATTCG ACTTCTATGC GGAAAAGGTC
AAACGCGCAC CATTATGGGT GAGACAGATT GGGATGGAGT GGATATGCCG CCTATCTGAA
GAGCCCGGAC GTATGTGGAA GCGCTATATC CTAGGAAACC CCCTGTTTAT CTACCGGGTA
TTGAAAGAGA TCCGCCGGGA AAGAGCACAG GCTGTGATGA CTCAGAAAAG TATCCGCAAG
GATAGCCATA AGCTTAATCA GAGTCATTCG GGTAATGGTG CGATGATTGA ACCTGAGTGT
AAAACAGACA CAACAGCTTC AGATATCAGC ATCGCAGACC TTTCGAATAT TGAAACTAAA
AATCTACTCG CACTCACCCG CTGCCAACGT CAAAGGATCA GCAGAAGACT AGGCTGCGGC
GTTAAGCGGA TATTAGACCT GTTTGGCGCC TCATTTTTAC TCTTACTTCT ACTTCCCGCT
CTGATGTTAG TGGCCTTGCT GATCCGAATC GAATCAAAAG GTCCGGTGCT ATTTAGCCAG
CAAAGAGCAG GAAAAAATAA CACCCCATTT ACCATGTGGA AATTCCGCTC CATGTACCAG
GACGCCGAGC AGCGACTGGG TAAACTACAA GCTGACAATG AGATGCAAGG GGGCGTGTTG
TTCAAAATGA AACGTGACCC TCGTATCACC TTAGTGGGCA AATTCATAAG AAAAGCCTCT
ATCGATGAAC TGCCTCAGCT GTGGAATGTG ATCTGCGGAG AGATGTCCCT GGTGGGCCCT
CGCCCGGCTC TGGAGTCTGA AGTAAAACAA TATTCTCTGA AAGAGAGAAA AAGATTAGCC
GTAAAACCAG GCATAACCTG TATCTGGCAG GTGAGTGGAC GCTCAGATAT TCCATTTGAC
CGACAGGTGG AGCTGGATGT GGATTATATC TACCAACAGT CACTGCTCAC CGATATTTGG
ATTTTACTTA AAACCATCCC GGCCGTACTG CTCGCACGGG GGGCTTACTA G
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| Protein sequence | MTTQTHITQT GIKPFSVRAI DILVAVLLIA VASPILILKY IYRRCRYGSA IEYVYIYGLD
NTQITLYQFT GEGICCQWPH LLNLLKGDIS LLGTEQSYIF EEASAHNPAS SLTHKLSTNQ
LSNLTEIKPG LLSFKLMHQQ VGLSFENQDN AIINAHRSAL SYLLAISRTL VIWLFSSHDA
NKHTKTIPLF DIELNNLSMS ELLTRITSQA RQSRALPMYK QAVDKQAMNK PAMAQYAFVN
ADCMNISIKN SQYRHCLQNA CDMVFADGSG IRLASLWKGL APKDNLNGTD MFPLLCQQLA
DNGLSLFLLG GEEGIAASAA DKMQCRFPRL KVAGTHHGFI DDPKLNDAVI KQINESGASV
LLVAMGAPKQ ELWLAKHKHR LDVAVGIGVG GLFDFYAEKV KRAPLWVRQI GMEWICRLSE
EPGRMWKRYI LGNPLFIYRV LKEIRRERAQ AVMTQKSIRK DSHKLNQSHS GNGAMIEPEC
KTDTTASDIS IADLSNIETK NLLALTRCQR QRISRRLGCG VKRILDLFGA SFLLLLLLPA
LMLVALLIRI ESKGPVLFSQ QRAGKNNTPF TMWKFRSMYQ DAEQRLGKLQ ADNEMQGGVL
FKMKRDPRIT LVGKFIRKAS IDELPQLWNV ICGEMSLVGP RPALESEVKQ YSLKERKRLA
VKPGITCIWQ VSGRSDIPFD RQVELDVDYI YQQSLLTDIW ILLKTIPAVL LARGAY
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