| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2924 |
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| Symbol | |
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| ID | 5613504 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3539007 |
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| End bp | 3541025 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933864 |
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| Product | outer membrane protein |
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| Protein accession | YP_001474659 |
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| Protein GI | 157376059 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03509] decaheme-associated outer membrane protein, MtrB/PioB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATATC CATTAAACCT CATCACCCTG GCGCTTATCA CTGCTTCTGG CTCCATGATG
TCAAGTTCAG CACAGGCAGC AGACTTTAGT GTCAACAAGG CCAATACCAG TAGCGTGAAC
ATGGACAAGT TCGAGTGCAA GCGCTGCCCA GATAACACAG GTTATCGCGG CAGTGTTGAG
CCTGGTACTG TCTATAACGA TAGTGGTGAT ATTCACAGTG CTAATGCACT GAACAGTGAA
GAGGGCGCCC ACGGTGTATT GAACGCGGAT CTGCAGTATC GCGGTAAAAC CGGTTATCAA
GCACAAGTTC AGGCTACTAA TCTGGGCCTG TCTAACAGCA GCGCACATCT TGAAGCGGGA
AAAACAGGCA GTTATCAAGC CGAGTTCGAT TATCGTCAGC TAAGCCAATA TAAACACGAT
AGTGCCAAGA GCAACCTTTG GTATACCGAT GGTATGTTAA CCCCGAGTAG CGATGTGCAA
ACCCAAGAGC TGTCCCTTAA GCGTCAGCAG ATCGGTATGG GGTTGACTGC CGGTCAGCTG
TGGGGCAAGC AAGACTACCA AGTATTTGCC CGTTATAGCC AGGAAGAGAA GACCGGTTAC
CAGGCATCAA GCTTGGTAAG CCCTCGGCCT ACCAACTTTG GGCTTCCCGT CGATGCCACA
ACTGACAAGC TCAGCTCGGG CCTGAGTATT AGTGGTCAAA ATTGGCAGAC CTCACTTAAC
TATCAGTACA GCGAATACGA TAATCAAATC GATTCACTCA ATCTGCCTTA TCTCGCCGAT
GTCTACGCGC CAGCACCGGA TAACAGTGCT TATCAACTCA GCCTTGCGGG GCAATATCTG
TTTAACCGTA CCGCCATCAG TGCACAGCTT GCGACAGGAC GCATGATGCA AGATGAGGCG
GTCATTCAGA CCTCTGGTAA CCCTATCCAA AACTGGGACG GCCAGGTGGA CACGACCGAC
GGCAAGCTGG CTATCACCTC GGTTCTGGAT AATCGCCTCC GCCTTGGCGG CAGCGTCAGC
TATTCCAAGC GTGATAACAA GAGCTCAACT TGGGAGTTTG CTCAACTGGA GTCCGATGGT
ATCAGCGGTG CCTTCAAACA AAATACGCTT CTGGATACAG AAAAGCTGAA TTACAAAGTC
AACGTGAGCT ATCGCATCAA TAGCGACTAT CGCCTACAAG CGGGCTATGA CCGTGAAGAG
TTAGAGCGTA GCCACAGTGA CCGCGATCAA ACCGATGAGA GCACCGTCTG GACCAAGCTC
GATATCCGCA GCTTTGCCAA CAGCAATCTC AAGCTAAAAG CCAGCTTCAG CCAGCGTGAT
GGCAGTGAAT ATCAAGCCAG CGAACTGACA TCCGACATCG ATAATCCACA GCTGCGCAAA
TTCTACCTTG CCGATCGTGA CAGAACGGCT TTTGAAGCCA AATTTAATCA TGCCCCGGCA
GGTTGGATAA ACATCAGCTT TAGCGGCCTC TACGCCGAAG ATGACTACAG CGATACCACC
TTAGGGCTCA CATCATCAGA AGACTATAGC TACAACCTCA ATGTCGACAT GCAGTTTGAT
AAGCGGCTAT CGGGCTATGG ATTTGCAGGT CAGCAGTGGT TCGAGTCAAG GCAAAATGGC
AGTCAGAGTT TTAGTGCGTC CGATTGGTCA GTCAACGTTG ATGATGAGTT TATCAATCTG
GGTGCAGGCT TGAACTACAC CGGACTCATG CAAGACAAGC TGAGTCTGGG ACTGGACTAT
CTGTTTGCCA ATTCAAGCAG CGATAGGCAG GTGGTTTATA CCACCACGCA GCCTCAGGGG
GATTACTACT CCTACAACCA CAGTGTAGAG ATGTATGCCA ACTATCTGCT GAGCGATCTG
ATGGCCGTCA GGCTGGGTTA CCGGTACGAA CGATACTACG ACACCGACAA TGCGCAGGTC
GATGTCAATG CCATAGATGG ATTAACGACT CTGGGCAAAC TTAACCATAA CTATAACGCG
CACCAGGTGA TGTTGTCGTT TAGCTACCAG TTGCGCTAG
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| Protein sequence | MKYPLNLITL ALITASGSMM SSSAQAADFS VNKANTSSVN MDKFECKRCP DNTGYRGSVE
PGTVYNDSGD IHSANALNSE EGAHGVLNAD LQYRGKTGYQ AQVQATNLGL SNSSAHLEAG
KTGSYQAEFD YRQLSQYKHD SAKSNLWYTD GMLTPSSDVQ TQELSLKRQQ IGMGLTAGQL
WGKQDYQVFA RYSQEEKTGY QASSLVSPRP TNFGLPVDAT TDKLSSGLSI SGQNWQTSLN
YQYSEYDNQI DSLNLPYLAD VYAPAPDNSA YQLSLAGQYL FNRTAISAQL ATGRMMQDEA
VIQTSGNPIQ NWDGQVDTTD GKLAITSVLD NRLRLGGSVS YSKRDNKSST WEFAQLESDG
ISGAFKQNTL LDTEKLNYKV NVSYRINSDY RLQAGYDREE LERSHSDRDQ TDESTVWTKL
DIRSFANSNL KLKASFSQRD GSEYQASELT SDIDNPQLRK FYLADRDRTA FEAKFNHAPA
GWINISFSGL YAEDDYSDTT LGLTSSEDYS YNLNVDMQFD KRLSGYGFAG QQWFESRQNG
SQSFSASDWS VNVDDEFINL GAGLNYTGLM QDKLSLGLDY LFANSSSDRQ VVYTTTQPQG
DYYSYNHSVE MYANYLLSDL MAVRLGYRYE RYYDTDNAQV DVNAIDGLTT LGKLNHNYNA
HQVMLSFSYQ LR
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